- incrementalUpdate(ArrayList<Link>, ArrayList<Link>) - Method in class extractors.DominatingExtractor
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Calculates and sets the anti-dominating metric in an incremental way given lists of links added and deleted.
- incrementalUpdate(ArrayList<Link>, ArrayList<Link>) - Method in class extractors.GraphletCounterExtractor
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Calculates and sets graphlet counts and frequencies in an incremental way given lists of links added and deleted
- incrementalUpdate(ArrayList<Link>, ArrayList<Link>) - Method in class extractors.TranscriptionFactorExtractor
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Calculates and sets the regulatory gene function metric in an incremental way given lists of links added and deleted.
- isAllPreds() - Method in class settings.CurrentSettings
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- isCommited() - Method in class network.modifiers.PredictionModifierOpt
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- isEmpty() - Method in class network.Network
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Checks if the network is empty
- isFinished() - Method in class wrappers.EnsembleSA
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- isFired() - Method in class loggers.ManualLogger
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Getter which returns if the logger is ready to send feedback
- isGlobalPenalty() - Method in class penalties.defined.AntiDominatePenalty
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- isGlobalPenalty() - Method in class penalties.defined.GraphletG4Penalty
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- isGlobalPenalty() - Method in class penalties.defined.PredictionConfidencePenalty
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- isGlobalPenalty() - Method in class penalties.defined.TFSparsityPenalty
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- isGlobalPenalty() - Method in interface penalties.PenaltyFunction
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Indicates if this penalty works on the ranking or on (sub)network level
- isModded() - Method in class network.modifiers.PredictionModifierOpt
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- isOppositeLink(Link) - Method in class network.link.Link
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Helper method which returns true of the given link is the opposite link of this.
- isPositive() - Method in class loggers.ManualLogger
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Getter which returns if the logger is positive on the current optimization process
- isRestarting() - Method in class schedulers.NetworkSA
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- isRestarting() - Method in class wrappers.EnsembleSA
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- isRestartPossible() - Method in class wrappers.EnsembleSA
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- isReverted() - Method in class network.modifiers.PredictionModifierOpt
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- isSettingParameters() - Method in class wrappers.EnsembleSA
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- isStopping() - Method in class wrappers.EnsembleSA
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- isTemperatureAutoDetermination() - Method in class settings.CurrentSettings
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- isTempGood() - Method in class loggers.defined.AcceptanceLogger
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- isTempMaxSetting() - Method in class loggers.defined.AcceptanceLogger
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- isTempToHigh() - Method in class loggers.defined.AcceptanceLogger
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- isTempToLow() - Method in class loggers.defined.AcceptanceLogger
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- isTrueLink() - Method in class network.link.LinkProperties
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