- PartitionFitnessFunction - Class in fitnessfunctions
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PartitionFitnessfunction is a class responsible for calculating and aggregating the total cost function associated with a certain ranking.
- PartitionFitnessFunction(ArrayList<LoggerOrPenaltyDefinition>, NetworkFileBackedWrapper, PredictionModifierOpt) - Constructor for class fitnessfunctions.PartitionFitnessFunction
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Constructs a PartitionFitnessFunction with an associated network, modifier and associated penalties.
- penalties - package penalties
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A group of classes that represent penalty functions/cost functions
- penalties.defined - package penalties.defined
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A group of classes that implement a penalty
- PenaltiesLogger - Class in loggers.defined
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PenaltiesLogger is a logger which keeps track of all registered penalties during single re-rankings.
- PenaltiesLogger(int, String, File) - Constructor for class loggers.defined.PenaltiesLogger
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Constructs a Penalitieslogger, calls constructor of logger abstract class
- PenaltyFunction - Interface in penalties
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PenaltyFunction is an interface for all penalties, but ranking based as subnetwork based.
- PenaltyPair - Class in fitnessfunctions
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PenaltyPair is a small helper class representing a penaltyname-currentfitness pair.
- PenaltyPair(String, double) - Constructor for class fitnessfunctions.PenaltyPair
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Constructs a PenaltyPair with the given name and score
- PredictionConfidencePenalty - Class in penalties.defined
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PredictionConfidencePenalty penalty implements the cost function diverging from the original ranking.
- PredictionConfidencePenalty(Object) - Constructor for class penalties.defined.PredictionConfidencePenalty
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Constructs a new PredictionConfidencePenalty, the arguments are specified as an String[] passed as an object for classloading.
- PredictionModifierOpt - Class in network.modifiers
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PredictionModifierOpt implement the NetworkModifier interface.
- PredictionModifierOpt(NetworkFileBackedWrapper, int, int) - Constructor for class network.modifiers.PredictionModifierOpt
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Constructs a new PredictionModifierOpt