- recalculateEndTemperatureAndAnnealingSettings() - Method in class settings.CurrentSettings
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Recalculates the annealing parameters which are determined from the others.
- removeIncomingLink(Network, Node) - Method in class network.node.Node
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Removes an incoming link to this node coming from another node a.
- removeLinkFromNetwork(int) - Method in class network.Network
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Removes a link at a certain index permanently in the network.
- removeLinkFromNetwork(Link) - Method in class network.Network
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Removes the link specified from the network permanently.
- removeNonCommitalLinkToNetwork(Link) - Method in class network.Network
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Removes a temporary link from the network
- removeOutGoingLink(Network, Node) - Method in class network.node.Node
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Removes an outgoing link to this node coming from another node a.
- RerankingResult - Class in network.postprocessing
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RerankingResult is a class storing the results of individual re-rankings.
- RerankingResult() - Constructor for class network.postprocessing.RerankingResult
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Constructs a new ReRankingResult
- reset() - Static method in class network.NetworkNameGenerator
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Clears all registered names.
- reset() - Static method in class network.node.NodeCollection
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Clears all the mapping in all nodes.
- resetNodeConnectivity(Network) - Method in class network.node.Node
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Similar to 'clearNetwork' this method resets a given network context.
- resultToTSV(String) - Method in class network.postprocessing.RerankingResult
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Writes the current reranking result to TSV
- returnAllRegisteredNodes() - Static method in class network.node.NodeCollection
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Returns a collection of all nodes currently registered in the system
- revert() - Method in class extractors.DominatingExtractor
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Reverts back to the current state of the network associated with this extractor.
- revert() - Method in class extractors.GraphletCounterExtractor
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Reverts back to the current state of the network associated with this extractor.
- revert() - Method in class extractors.TranscriptionFactorExtractor
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Reverts back to the current state of the network associated with this extractor.
- revert() - Method in class fitnessfunctions.PartitionFitnessFunction
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Reverts the changes made by the modifier to all subnetworks and resets the penaltyfunction scores.
- revert() - Method in class network.link.LinkProperties
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This method reverts the last changes made to this link and goes back to the previous state.
- revert() - Method in interface network.modifiers.NetworkModifier
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Revert back to previous state
- revert() - Method in class network.modifiers.PredictionModifierOpt
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Implements the revert action of the interface.
- revert() - Method in class network.Network
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Reverts network to original state.
- revertIncrementalPenalty() - Method in class penalties.defined.AntiDominatePenalty
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- revertIncrementalPenalty() - Method in class penalties.defined.GraphletG4Penalty
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- revertIncrementalPenalty() - Method in class penalties.defined.PredictionConfidencePenalty
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- revertIncrementalPenalty() - Method in class penalties.defined.TFSparsityPenalty
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- revertIncrementalPenalty() - Method in interface penalties.PenaltyFunction
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Reverts the penalty score to the previous value, discarding any changes made by the latest incremental update
- run() - Method in class schedulers.NetworkSA
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Runs the optimization procedure.