- schedulers - package schedulers
-
A group of classes implementing a single re-ranking procedure.
- setAccepted(int) - Method in class loggers.defined.AcceptanceLogger
-
- setAcceptedList(ArrayList<Double>) - Method in class loggers.defined.AcceptanceLogger
-
- setAllPreds(boolean) - Method in class settings.CurrentSettings
-
- setAnnealingMultiplier(double) - Method in class settings.CurrentSettings
-
- setBetter(int) - Method in class loggers.defined.AcceptanceLogger
-
- setBetterList(ArrayList<Double>) - Method in class loggers.defined.AcceptanceLogger
-
- setChance(ArrayList<Double>) - Method in class loggers.defined.AcceptanceLogger
-
- setChunckIncrease(double) - Method in class settings.CurrentSettings
-
- setChuncks(int) - Method in class network.NetworkFileBackedWrapper
-
- setChuncks(int) - Method in class settings.CurrentSettings
-
- setClassName(String) - Method in class settings.LoggerOrPenaltyDefinition
-
- setCoef(double) - Method in class penalties.defined.AntiDominatePenalty
-
- setCoef(double) - Method in class penalties.defined.GraphletG4Penalty
-
- setCoef(double) - Method in class penalties.defined.PredictionConfidencePenalty
-
- setCoef(double) - Method in class penalties.defined.TFSparsityPenalty
-
- setCoef(double) - Method in interface penalties.PenaltyFunction
-
Sets the relative weight for this penalty
- setCoefs(double) - Method in class network.NetworkFileBackedWrapper
-
- setCommited(boolean) - Method in class network.modifiers.PredictionModifierOpt
-
- setContent(String[]) - Method in class settings.LoggerOrPenaltyDefinition
-
- setCoolingMultiplier(double) - Method in class schedulers.NetworkSA
-
- setCurrentSet(int) - Method in class network.link.LinkProperties
-
- setCurrentSettings(CurrentSettings) - Method in class main.Netter
-
Setter for the current settings
- setCutoff(int) - Method in class network.NetworkFileBackedWrapper
-
- setCutoff(int) - Method in class network.postprocessing.RerankingResult
-
- setCutoff(int) - Method in class settings.CurrentSettings
-
- setDeterminationZone(double) - Method in class settings.CurrentSettings
-
- setEligible() - Method in class wrappers.EnsembleSA
-
- setEndTemperature(double) - Method in class settings.CurrentSettings
-
- setEnsemble(EnsembleSA) - Method in class schedulers.NetworkSA
-
- setFileName(String) - Method in class network.NetworkFileBackedWrapper
-
- setFinished(boolean) - Method in class wrappers.EnsembleSA
-
- setFired(boolean) - Method in class loggers.ManualLogger
-
Setter to indicate if logger is ready to send feedback
- setFitness(PartitionFitnessFunction) - Method in class schedulers.NetworkSA
-
- setFitnessIncrementFunction(PartitionFitnessFunction) - Method in class network.modifiers.PredictionModifierOpt
-
- setFreezingTemperature(double) - Method in class schedulers.NetworkSA
-
- setGranularity(int) - Method in class loggers.defined.AcceptanceLogger
-
- setIterations(int) - Method in class wrappers.EnsembleSA
-
- setLinkProperties(LinkProperties) - Method in class network.link.Link
-
Setter for the link properties
- setLinks(ArrayList<Link>) - Method in class network.Network
-
- setLogFile(String) - Method in class loggers.ManualLogger
-
Setter to set the log filename
- setLogged(int) - Method in class loggers.defined.AcceptanceLogger
-
- setLoggers(ArrayList<ManualLogger>) - Method in class settings.CurrentSettings
-
- setLowerBoundSet(int) - Method in class network.link.LinkProperties
-
- setMaxIterations(long) - Method in class schedulers.NetworkSA
-
- setMaxIterations(long) - Method in class settings.CurrentSettings
-
- setModded(boolean) - Method in class network.modifiers.PredictionModifierOpt
-
- setModified(HashSet<Link>) - Method in class network.modifiers.PredictionModifierOpt
-
- setModifier(NetworkModifier) - Method in class schedulers.NetworkSA
-
- setModifyEachTurn(int) - Method in class network.modifiers.PredictionModifierOpt
-
- setModifyEachTurn(int) - Method in class settings.CurrentSettings
-
- setMoveEachTurn(int) - Method in class network.modifiers.PredictionModifierOpt
-
- setMoveEachTurn(int) - Method in class settings.CurrentSettings
-
- setName(String) - Method in class fitnessfunctions.PenaltyPair
-
Setter for the penalty name
- setName(String) - Method in class network.node.Node
-
Setter for name of node
- setNetwork(Network) - Method in class extractors.DominatingExtractor
-
Sets the network associated with this extractor.
- setNetwork(Network) - Method in class extractors.GraphletCounterExtractor
-
Sets the network associated with this extractor.
- setNetwork(Network) - Method in class extractors.TranscriptionFactorExtractor
-
Sets the network associated with this extractor.
- setNetwork(Network) - Method in class network.modifiers.PredictionModifierOpt
-
- setNetwork(Network) - Method in class network.NetworkFileBackedWrapper
-
- setNetwork(Network) - Method in class penalties.defined.AntiDominatePenalty
-
- setNetwork(Network) - Method in class penalties.defined.GraphletG4Penalty
-
- setNetwork(Network) - Method in class penalties.defined.PredictionConfidencePenalty
-
- setNetwork(Network) - Method in class penalties.defined.TFSparsityPenalty
-
- setNetwork(Network) - Method in interface penalties.PenaltyFunction
-
Sets the network/ranking associated with this penalty
- setNetwork(Network) - Method in class schedulers.NetworkSA
-
- setNetworkCoefMap(HashMap<Network, Double>) - Method in class network.NetworkPartition
-
- setNetworks(Network[]) - Method in class network.NetworkPartition
-
- setNodes(LinkedHashSet<Node>) - Method in class network.Network
-
- setOriginalFile(String) - Method in class network.postprocessing.RerankingResult
-
- setOriginalPredictionRank(int) - Method in class network.link.LinkProperties
-
- setOutputDir(File) - Method in class settings.CurrentSettings
-
- setOutputDirString(String) - Method in class settings.CurrentSettings
-
- setOutputFileName(String) - Method in class network.NetworkFileBackedWrapper
-
- setOutputSuffix(String) - Method in class settings.CurrentSettings
-
- setPartition(NetworkPartition) - Method in class network.NetworkFileBackedWrapper
-
- setPartitions(ArrayList<Integer>) - Method in class network.NetworkPartition
-
- setPenalties(ArrayList<LoggerOrPenaltyDefinition>) - Method in class settings.CurrentSettings
-
- setPositive(boolean) - Method in class loggers.ManualLogger
-
Setter which sets logger's opinion on optimization process
- setPrediction(Network) - Method in class network.NetworkPartition
-
- setPredictionRank(int) - Method in class network.link.LinkProperties
-
- setPreds(String[]) - Method in class settings.CurrentSettings
-
- setPreviousLowerBound(int) - Method in class network.link.LinkProperties
-
- setPreviousPredictionRank(int) - Method in class network.link.LinkProperties
-
- setPreviousSet(int) - Method in class network.link.LinkProperties
-
- setPreviousUpperBound(int) - Method in class network.link.LinkProperties
-
- setRestarting(boolean) - Method in class schedulers.NetworkSA
-
- setRestarting(boolean) - Method in class wrappers.EnsembleSA
-
- setRestartPossible(boolean) - Method in class wrappers.EnsembleSA
-
- setReverted(int) - Method in class loggers.defined.AcceptanceLogger
-
- setReverted(boolean) - Method in class network.modifiers.PredictionModifierOpt
-
- setRevertedList(ArrayList<Double>) - Method in class loggers.defined.AcceptanceLogger
-
- setScore(double) - Method in class fitnessfunctions.PenaltyPair
-
Setter for the fitness
- setSettingParameters(boolean) - Method in class wrappers.EnsembleSA
-
- setStartTemperature(double) - Method in class settings.CurrentSettings
-
- setStopping(boolean) - Method in class wrappers.EnsembleSA
-
- setT0(double) - Method in class schedulers.NetworkSA
-
- setTarget(Node) - Method in class network.link.Link
-
Setter for target node
- setTemperatureAllowedDeviation(double) - Method in class settings.CurrentSettings
-
- setTemperatureAutoDetermination(boolean) - Method in class settings.CurrentSettings
-
- setTemperatureTargetGoal(double) - Method in class settings.CurrentSettings
-
- setTempGood(boolean) - Method in class loggers.defined.AcceptanceLogger
-
- setTempIterationCheck(int) - Method in class loggers.defined.AcceptanceLogger
-
- setTempMaxSetting(boolean) - Method in class loggers.defined.AcceptanceLogger
-
- setTempTargetGoal(double) - Method in class loggers.defined.AcceptanceLogger
-
- setTempTargetGoalAllowedDeviation(double) - Method in class loggers.defined.AcceptanceLogger
-
- setTempToHigh(boolean) - Method in class loggers.defined.AcceptanceLogger
-
- setTempToLow(boolean) - Method in class loggers.defined.AcceptanceLogger
-
- setTestDir(String) - Method in class settings.CurrentSettings
-
- setTf(Node) - Method in class network.link.Link
-
Setter for source node/transcrption factor.
- setThreadPool(ArrayList<NetworkSA>) - Method in class wrappers.EnsembleSA
-
- settings - package settings
-
A group of classes that represent penalty functions/cost functions
- setTotalIterations(int) - Method in class settings.CurrentSettings
-
- setTrueLink(boolean) - Method in class network.link.LinkProperties
-
- setUpperBoundSet(int) - Method in class network.link.LinkProperties
-
- setWorkersAvailable(int) - Method in class settings.CurrentSettings
-
- setWorkersInProgress(int) - Method in class wrappers.EnsembleSA
-
- setWrapper(NetworkFileBackedWrapper) - Method in class schedulers.NetworkSA
-
- sortNetworkNameLink() - Method in class network.Network
-
Sorts the links by name
- sortNetworkPredictionRank() - Method in class network.Network
-
Sorts the links by rank
- sortOriginalRankInterval(int, int, int) - Method in class network.Network
-
Alters the current ranking by tie-breaking on the original ranking