A C D E F G H I L M N P R S T U V W

U

update() - Method in class extractors.DominatingExtractor

Calculates the anti-dominating metric from scratch for the currently associated network

update() - Method in class extractors.GraphletCounterExtractor

Calculates the graphlet-counts from scratch for the currently associated network

update() - Method in class extractors.TranscriptionFactorExtractor

Calculates the regulatory gene function metric from scratch for the currently associated network

updateIncrementalPenalty() - Method in class penalties.defined.AntiDominatePenalty

updateIncrementalPenalty() - Method in class penalties.defined.GraphletG4Penalty

updateIncrementalPenalty() - Method in class penalties.defined.PredictionConfidencePenalty

updateIncrementalPenalty() - Method in class penalties.defined.TFSparsityPenalty

updateIncrementalPenalty() - Method in interface penalties.PenaltyFunction

Calculates the new penalty score in an incremental way after (small) changes have been to the network

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