E. Coli Interaction Network Data
The network file has been compiled from different sources as:
- KEGG: (de)-methylation, (de)-phosphorylation, and metabolic interactions
- RegulonDB: Protein-DNA, sigma factor binding, sRNA-DNA interactions
- STRING: Protein-Protein interactions
The final sample network has 22,108 lines divided in 9 predefined interaction-types (header) and the body.
E. Coli Mutation Data
The mutation file contains the genomic information of 16 parallel evolved E. coli populations. The alignment and variant calling processes are explained in the reference paper. Similarly, the structure of the file is explained in our documentation
The file has 2,513 lines including the header. keep in mind that there are 16 different conditions, one for each evolved population.
E. Coli Gene-Names Mapping File
The file contains the conversion ids from numerical nomenclature, to gene names. The from column matches the ids used in the network file and mutation file, any mismatch will confuse the program throwing an error.
The file has 7,816 lines including the header.