PhoPQ regulated genes, differentially expressed in S. typhimurium but not in E. coli


Unique operon S. typhimurium Motif in S. typhimurium Motif in E. coli Description Number List
yes no   Unique S. typhimurium genes with indirect PhoP regulation 63 list
yes   Unique S. typhimurium genes with direct PhoP regulation 21 list
no no no Indirectly PhoP regulated in S. typhimurium and no PhoP motif found in E. coli 64 list
yes Indirectly PhoP regulated in S. typhimurium, and PhoP motif found in E. coli 9 list
yes no Directly PhoP regulated in S. typhimurium and no PhoP motif found in E. coli 13 list
yes Directly PhoP regulated in S. typhimurium and PhoP motif found in E. coli 6 list


 [top] Unique S. typhimurium genes with indirect PhoP regulation
OperonIDgeneexpressionfunctionOrthologsmotif
1065 STM1583+ putative cytoplasmic protein00
937 ssrB+ STM1391 S. typhimurium SsrB (gi|2765824) Secretion system regulator: transcriptonal activator, homologous with degU*uvrY*bvgA Putative RBS for ssrB; RegulonDB:STMS1H00162800
ssrA0 STM1392 S. typhimurium SpiR (gi|1498305) Secretion system regulator:Sensor component
525 STM07990 hypothetical protein putative cytoplasmic protein00
slrP+ STM0800 S. typhimurium leucine-rich repeat protein SlrP (gi|5107020) leucine-rich repeat protein
2173 STY36150 Contains possible membrane spanning hydrophobic domains. putative membrane protein00
STY3614+ Contains a possible N-terminal signal sequence possible exported protein PS00017 ATP*GTP-binding site motif A (P-loop)
272 STM0412+ S. typhimurium hypothetical protein 14.5K (gi|1073681) putative inner membrane protein00
2802 phnO+ STM4287 Ortholog of E. coli putative regulator, phn operon (AAC77054.1); Blastp hit to AAC77054.1 (144 aa), 77% identity in aa 1 - 144 putative regulator in phn operon00
313 ffs+ STM0467 signal recognition particle, RNA component00
822 pagD+ STM1244 S. typhimurium virulence protein PAGD precursor. (SW:PAGD_SALTY) PhoP regulated00
1836 STM2778+ pseudogene; frameshift00
722 pipB+ STM1088 Pathogenicity island encoded protein: SPI300
1838 STM2780+ Paralog of E. coli orf, hypothetical protein (AAC77036.1); Blastp hit to AAC77036.1 (430 aa), 25% identity in aa 148 - 306, 26 503321701dentity in aa 145 - 259, 22 0dentity in aa 152 - 348, 23 173642208dentity in aa 238 - 412 Homolog of pipB, putative pentapeptide repeats (8 copies) Putative RBS for STM2780; RegulonDB:STMS1H00285300
1841 nxiA+ STM2783 putative nickel transporter00
842 STM1269+ putative chorismate mutase00
29 spvB+ PSLT039; spvA Salmonella plasmid virulence: hydrophilic protein00
2996 STM4562+ putative inner membrane protein Putative RBS for STM4562; RegulonDB:STMS1H00442600
624 STY10320 Similar to Escherichia coli DNA-damage-inducible protein I SW:DINI_ECOLI () fasta scores: E(): 6.2e-13, 48.7% id in 78 aa and to Salmonella typhimurium hypothetical 7.3 kda protein TR:O84897 (EMBL:AF001386) fasta scores: E(): 4.5e-25, 98.5% id in 66 aa. Also similar to Bacteriophage 186 sos operon Tum protein SW:TUM_BP186 (P41063) (146 aa) fasta scores: E(): 2.3e-05, 26.3% id in 76 aa Paralogue of E. coli dinI (DINI_ECOLI); Fasta hit to DINI_ECOLI (81 aa), 49% identity in 78 aa overlap putative damage-inducible protein00
STY10340 No significant database matches putative bacteriophage protein
STY1033+ No significant database matches putative bacteriophage protein
2466 mgtC+ STM3764 S. typhimurium Mg(2+) transport ATPase protein C. (SW:ATMC_SALTY) Mg2+ transport protein00
1079 STM16000 putative inner membrane protein Putative RBS for STM1600; RegulonDB:STMS1H00180100
ugtL+ STM1601 S. typhimurium putative membrane protein UgtL (gi|4585341) putative membrane protein: homology with chitinase from Schizosaccharomyces
727 pipD+ STM1094 Pathogenicity island encoded protein: SPI3 Putative RBS for pipD; RegulonDB:STMS1H00136600
1847 ygaU+ STM2795 Ortholog of E. coli orf, hypothetical protein (AAC75712.1); Blastp hit to AAC75712.1 (149 aa), 93% identity in aa 1 - 149 putative LysM domain00
596 STM09080 S. typhimurium bacteriophage ES18 gp15 protein (gi|1143595) Fels-1 prophage00
STM0906+ Fels-1 prophage Putative RBS for STM0907; RegulonDB:STMS1H001199
STM09070 Fels-1 prophage; putative chitinase Putative RBS for STM0908; RegulonDB:STMS1H001200
2759 yjbH0 STM4225 Ortholog of E. coli orf, hypothetical protein (AAC76999.1); Blastp hit to AAC76999.1 (698 aa), 92% identity in aa 1 - 698 putative outer membrane lipoprotein00
yjbG0 STM4224 Ortholog of E. coli orf, hypothetical protein (AAC76998.1); Blastp hit to AAC76998.1 (245 aa), 74% identity in aa 1 - 245 putative periplasmic protein Putative RBS for yjbH; RegulonDB:STMS1H004131
yjbE+ STM4222 Ortholog of E. coli orf, hypothetical protein (AAC76996.1); Blastp hit to AAC76996.1 (80 aa), 96% identity in aa 1 - 80 putative outer membrane protein
yjbF0 STM4223 Ortholog of E. coli orf, hypothetical protein (AAC76997.1); Blastp hit to AAC76997.1 (222 aa), 86% identity in aa 1 - 221 putative outer membrane lipoprotein Putative RBS for yjbG; RegulonDB:STMS1H004130
1052 rpsV+ STM1565 Ortholog of E. coli 30S ribosomal subunit protein S22 (AAC74553.1); Blastp hit to AAC74553.1 (45 aa), 86% identity in aa 1 - 44 30S ribosomal subunit protein S2200
2912 STM44420 hypothetical protein putative cytoplasmic protein Putative RBS for STM4442; RegulonDB:STMS1H00431900
STM44440 putative inner membrane protein
STM4440+ S. typhimurium nitrogen regulation protein nr(ii) (SW:NTRB_SALTY) putative cytoplasmic protein
STM4441+ putative cytoplasmic protein
STM44430 putative inner membrane protein Putative RBS for STM4443; RegulonDB:STMS1H004320
1255 yobG+ STM1840 Ortholog of E. coli orf, hypothetical protein (AAC74896.1); Blastp hit to AAC74896.1 (47 aa), 85% identity in aa 1 - 47 putative inner membrane protein00
830 STM1252+ putative cytoplasmic protein00
1034 STM15420 Paralog of E. coli starvation sensing protein (AAC74652.1); Blastp hit to AAC74652.1 (339 aa), 32% identity in aa 1 - 337 putative zinc-binding dehydrogenase00
STM1543+ Paralog of E. coli putative transport protein (AAC76161.1); Blastp hit to AAC76161.1 (444 aa), 32% identity in aa 17 - 433, 23 503319730dentity in aa 108 - 270 putative transport protein Putative RBS for STM1542; RegulonDB:STMS1H001752
2803 phnB+ STM4288 Ortholog of E. coli orf, hypothetical protein (AAC77068.1); Blastp hit to AAC77068.1 (147 aa), 83% identity in aa 1 - 145 putative cytoplasmic protein00
1354 dsrB+ STM1983 regulatory RNA; regulated by DsrA and HNS, under control of RpoS Putative RBS for dsrB; RegulonDB:STMS1H00214200
1840 mig_14+ STM2782 putative transcription activator00
629 STY1042+ Similar to Pseudomonas aeruginosa lytic enzyme lys TR:Q9S566 (EMBL:AB030825) fasta scores: E(): 2e-20, 43.5% id in 184 aa putative bacteriophage protein00
STY10430 Similar to Bacteriophage N15 gp55 gene 55 TR:O64363 (EMBL:AF064539) (181 aa) fasta scores: E(): 0, 72.4% id in 170 aa, and to Escherichia coli from bases 1630410 to 1640329 TR:P76158 (EMBL:AE000252) (165 aa) fasta scores: E(): 4.6e-32, 66.0% id in 153 aa Orthologue of E. coli P76158; Fasta hit to P76158 (165 aa), 66% identity in 153 aa overlap putative secreted protein
STY10400 Similar to Bacteriophage P27 hypothetical 13.1 kda protein TR:CAB93764 (EMBL:AJ249351) fasta scores: E(): 1.2e-16, 45.0% id in 131 aa, and to bacteriophage phi CTX complete genome sequence TR:Q9ZXL8 (EMBL:AB008550) fasta scores: E(): 1.2, 24.6% id in 118 aa putative prophage membrane protein
STY10410 Similar to Bacteriophage P27 hypothetical 10.5 kda protein TR:CAB93979 (EMBL:AJ249351) fasta scores: E(): 1.4e-14, 43.5% id in 92 aa putative prophage membrane protein
1717 STM2585+ Gifsy-1 prophage: similar to transpose Putative RBS for STM2585; RegulonDB:STMS1H00268100
2478 STM3785+ Paralog of E. coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); Blastp hit to AAC73824.1 (240 aa), 31% identity in aa 3 - 216 putative regulatory protein, gntR family00
STM37830 Paralog of E. coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); Blastp hit to AAC75154.1 (94 aa), 37% identity in aa 1 - 94 putative periplasmic protein
STM37840 Paralog of E. coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); Blastp hit to AAC75155.1 (150 aa), 23% identity in aa 5 - 143 putative phosphotransferase system mannitol*fructose-specific IIA domain Putative RBS for STM3783; RegulonDB:STMS1H003752
2207 STY36750 Similar to Bacteriophage P2 terminase, ATPase subunit P SW:VPP_BPP2 (P25479) (590 aa) fasta scores: E(): 0, 63.9% id in 590 aa and to Bacteriophage 186 terminase subunit TR:Q9T0R3 (EMBL:U32222) (589 aa) fasta scores: E(): 0, 63.4% id in 579 aa terminase, ATPase subunit00
STY3674+ Similar to Bacteriophage 186 capsid portal protein W TR:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 0, 62.0% id in 342 aa and to Bacteriophage P2 presumed portal vertex protein Q SW:VPQ_BPP2 (P25480) (344 aa) fasta scores: E(): 0, 61.7% id in 342 aa probable capsid portal protein
1160 osmB+ STM1705 S. typhimurium osmotically inducible lipoprotein B. (SW:OSMB_SALTY) osmotically inducible lipoprotein00
2838 ecnB+ STM4336 putative entericidin B precursor00
1267 STM1854+ hypothetical protein putative inner membrane protein00
2824 phoN+ STM4319 S. typhimurium nonspecific acid phosphatase precursor. (SW:PHON_SALTY) non-specific acid phosphatase00
827 STM1249+ putative periplasmic protein00
266 STM0402+ Paralog of E. coli alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides (AAC73706.1); Blastp hit to AAC73706.1 (187 aa), 36% identity in aa 1 - 186 putative thiol - alkyl hydroperoxide reductase00
995 STM1485+ Paralog of E. coli acid shock protein (AAC74669.1); Blastp hit to AAC74669.1 (111 aa), 67% identity in aa 2 - 81, 46 503319506dentity in aa 30 - 111 acid shock protein00
39 samB+ STY4597 Similar to Salmonella typhimurium cryptic 60-MDa plasmid SamB protein SW:SAMB_SALTY (P23832) (424 aa) fasta scores: E(): 0, 89.6% id in 423 aa, and to Shigella flexneri ImpB impB TR:Q9ZA91 (EMBL:AF079316) (423 aa) fasta scores: E(): 0, 71.7% id in 421 aa Paralogue of E. coli umuC (UMUC_ECOLI); Fasta hit to UMUC_ECOLI (422 aa), 63% identity in 420 aa overlap UV protection protein Pfam match to entry PF00817 IMS, impB*mucB*samB family, score 545.70, E-value 3.1e-16000
1716 gogB+ STM2584 Gifsy-1 prophage: leucine-rich repeat protein Putative RBS for gogB; RegulonDB:STMS1H00268000
229 STM0359+ hypothetical protein putative cytoplasmic protein Putative RBS for STM0359; RegulonDB:STMS1H00071500
54 STM0081+ hypothetical protein putative secreted protein00
2710 STM4141+ Ortholog of E. coli orf, hypothetical protein (AAC76953.1); Blastp hit to AAC76953.1 (51 aa), 55% identity in aa 1 - 40 putative cytoplasmic protein00
STM41400 pseudogene; no in-frame start
593 STM09010 Fels-1 prophage; putative phage DNA primase Putative RBS for STM0901; RegulonDB:STMS1H001194 Putative RBS for STM0902; RegulonDB:STMS1H00119500
STM09030 Paralog of E. coli orf, hypothetical protein (AAC74632.1); Blastp hit to AAC74632.1 (260 aa), 38% identity in aa 11 - 130, 37 503318933dentity in aa 152 - 259, 35 0dentity in aa 121 - 165, 58 173642208dentity in aa 123 - 134, 40 173451880dentity in aa 168 - 187 Fels-1 prophage; putative chaparone Putative RBS for STM0903; RegulonDB:STMS1H001196
STM09020 Fels-1 prophage
STM0900+ Paralog of E. coli putative ATP-dependent helicase (AAC75245.1); Blastp hit to AAC75245.1 (586 aa), 29% identity in aa 124 - 378, 25 503318597dentity in aa 20 - 158 Fels-1 prophage; putative DNA or RNA helicases of superfamily II
2684 STM4104+ Paralog of E. coli UDP-sugar hydrolase (5-nucleotidase) (AAC73582.1); Blastp hit to AAC73582.1 (550 aa), 25% identity in aa 34 - 253, 28 503323531dentity in aa 383 - 506 putative 5-nucleotidase*2,3-cyclic phosphodiesterase or related esterase Putative RBS for STM4104; RegulonDB:STMS1H00402800
30 spvA+ PSLT040; spvR Salmonella plasmid virulence: outer membrane protein00
1279 pagK+ STM1867 S. typhimurium PagK (gi|2582047) PhoPQ-activated gene00
156 rrlH+ STM0252 23S ribosomal RNA00
1078 pdgL+ STM1599 S. typhimurium D-alanyl-D-alanine dipeptidase PcgL precursor (gi|4585342) Periplasmic dipeptidase for D-ala-D-ala digestion in peptidoglycan00
1148 STY1879+ No significant database matches hypothetical protein00
1987 STM3036+ putative inner membrane protein00
1038 STM1548+ Paralog of E. coli synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase (AAC73508.1); Blastp hit to AAC73508.1 (356 aa), 28% identity in aa 23 - 343 putativeS-adenosylmethionine:tRNA-ribosyltransferase-isomerase00
2990 STM4552+ putative inner membrane protein00
1837 STM2779+ hypothetical protein putative inner membrane protein00
826 STM1248+ pseudogene; frameshift00
2493 STM3806+ pseudogene; frameshift00
562 STM0859+ Paralog of E. coli putative transcriptional regulator LYSR-type (AAC74667.1); Blastp hit to AAC74667.1 (297 aa), 28% identity in aa 1 - 264 putative transcriptional regulator, LysR family00
840 STM1267+ Paralog of E. coli orf, hypothetical protein (AAC74250.1); Blastp hit to AAC74250.1 (88 aa), 41% identity in aa 23 - 88 putative cytoplasmic protein00
1102 STM16340 Paralog of E. coli putative transport system permease protein (former yecC) (AAC74985.1); Blastp hit to AAC74985.1 (222 aa), 31% identity in aa 14 - 213 putative amino acid ABC transporter permease component00
STM16360 Paralog of E. coli putative transport system permease protein (former yecC) (AAC74985.1); Blastp hit to AAC74985.1 (222 aa), 34% identity in aa 10 - 216 putative ABC-type transport system probable membrane spanning protein
STM1633+ Paralog of E. coli putative periplasmic binding transport protein (AAC74987.1); Blastp hit to AAC74987.1 (266 aa), 25% identity in aa 19 - 232 putative periplasmic binding protein
STM1635+ Paralog of E. coli putative ATP-binding component of a transport system (AAC76303.1); Blastp hit to AAC76303.1 (252 aa), 42% identity in aa 11 - 230 putative ABC-type polar amino acid transport system, ATPase component Putative RBS for STM1636; RegulonDB:STMS1H001832
832 STM1254+ putative outer membrane lipoprotein Putative RBS for STM1254; RegulonDB:STMS1H00150700

 [top] Unique S. typhimurium genes with direct PhoP regulation
OperonIDgeneexpressionfunctionOrthologsmotif
828 STM1250+ hypothetical protein putative cytoplasmic protein Putative RBS for STM1250; RegulonDB:STMS1H00150300
2656 STM40650 S. typhimurium hypothetical protein (gi|7688349) putative permease of the Na+:galactoside symporter family00
STM4067+ Paralog of E. coli orf, hypothetical protein (AAC75160.1); Blastp hit to AAC75160.1 (334 aa), 30% identity in aa 108 - 325, 32 503323498dentity in aa 5 - 188 putative ADP-ribosylglycohydrolase
STM40660 Paralog of E. coli putative kinase (AAD13445.1); Blastp hit to AAD13445.1 (300 aa), 28% identity in aa 14 - 297 putative sugar kinase, ribokinase family
55 traM+ PSLT073 conjugative transfer: mating signal00
1280 mig_3+ STM1868 S. typhimurium phage tail assembly protein (gi|2460256) Homology to phage-tail assembly proteins00
2252 yheR0 STM3458 Ortholog of E. coli putative NAD(P)H oxidoreductase (AAC76376.1); Blastp hit to AAC76376.1 (184 aa), 89% identity in aa 2 - 183 putative NAD(P)H oxidoreductase Putative RBS for kefB; RegulonDB:STMS1H00345900
yheV+ STM3456 putative cytoplasmic protein Putative RBS for yheV; RegulonDB:STMS1H003458
kefB0 STM3457 Ortholog of E. coli K+ efflux; NEM-activable K+*H+ antiporter (AAC76375.1); Blastp hit to AAC76375.1 (601 aa), 93% identity in aa 1 - 601 CPA2 family, K+:H+ antiporter
311 ybaY+ STM0465 Ortholog of E. coli glycoprotein*polysaccharide metabolism (AAC73556.1); Blastp hit to AAC73556.1 (190 aa), 88% identity in aa 1 - 190 glycoprotein*polysaccharide metabolism00
2285 cdh+ STY3800 This CDS appears to be a gene remnant which is highly similar to the very C-terminus of Escherichia coli CDP-diacylglycerol pyrophosphatase Cdh SW:CDH_ECOLI (P06282) (251 aa) fasta scores: E(): 9.4e-13, 86.5% id in 37 aa. Note this CDS is also highly similar, but not identical to the very C-terminus of the upstream STY3807 (CDP-diacylglycerol pyrophosphatase).00
STY38010 This CDS is a possible gene remnant which is highly similar to the N-terminus of Enterobacter cloacae hypothetical protein TR:Q9Z6C0 (EMBL:AF098509) (434 aa) fasta scores: E(): 9e-11, 68.6% id in 51 aa
2801 lpxO+ STM4286 S. typhimurium putative dioxygenase; LpxO (gi|9454389) putative dioxygenase for synthesis of lipid00
33 rlgA+ PSLT044 putative integrase protein00
PSLT043+ putative phosphoribulokinase * uridine kinase family
PSLT0450 putative resolvase
21 PSLT026+ putative periplasmic protein00
1839 virK+ STM2781 Paralog of E. coli putative enzyme (AAC73964.1); Blastp hit to AAC73964.1 (330 aa), 39% identity in aa 47 - 329 virulence gene; homologous sequence to virK in Shigella00
1330 STM1940+ putative cell wall-associated hydrolase00
1275 pagO+ STM1862 S. typhimurium PAGO protein. (SW:PAGO_SALTY) PhoPQ-activated gene; predicted integral membrane protein00
1035 pqaA+ STM1544 PhoPQ-regulated protein00
189 ybeJ+ STM0303 Paralog of E. coli orf, hypothetical protein (AAC74108.1); Blastp hit to AAC74108.1 (672 aa), 36% identity in aa 52 - 189, 21 503318325dentity in aa 213 - 280 putative xylanase*chitin deacetylase00
274 yajI+ STM0414 Ortholog of E. coli orf, hypothetical protein (AAC73515.1); Blastp hit to AAC73515.1 (199 aa), 73% identity in aa 21 - 199 putative outer membrane lipoprotein Putative binding site for CytR, RegulonDB: STMS1H00012800
2722 STM4157+ putative cytoplasmic protein00
1276 STM18630 hypothetical protein putative inner membrane protein00
STM1864+ putative inner membrane protein
824 pagC+ STM1246 S. typhimurium virulence membrane protein PAGC precursor. (SW:PAGC_SALTY) PhoP regulated: reduced macrophage survival00
192 STM0306+ Homolog of sapA00
2347 STM3595+ putative phosphatase00

 [top] Indirectly PhoP regulated in S. typhimurium and no PhoP motif found in E. coli
OperonIDgeneexpressionfunctionOrthologsmotif
2465 mgtB+ STM3763 S. typhimurium Mg(2+) transport ATPase, P-type 2. (SW:ATMB_SALTY) Mg2+ transport protein Putative RBS for mgtB; RegulonDB:STMS1H00373227300
2206 yhcO+ STM3363 Ortholog of E. coli orf, hypothetical protein (AAC76271.1); Blastp hit to AAC76271.1 (90 aa), 76% identity in aa 1 - 90 putative cytoplasmic protein20890
2234 mscL+ STM3410 Ortholog of E. coli mechanosensitive channel (AAC76316.1); Blastp hit to AAC76316.1 (136 aa), 92% identity in aa 1 - 136 mechanosensitive channel21200
912 ydiQ0 STM1354 Ortholog of E. coli putative transport protein (AAC74767.1); Blastp hit to AAC74767.1 (254 aa), 79% identity in aa 1 - 254 putative electron transfer flavoprotein11200
ydiR+ STM1353 Ortholog of E. coli putative flavoprotein (AAC74768.1); Blastp hit to AAC74768.1 (312 aa), 72% identity in aa 1 - 312 putative electron transfer flavoprotein
898 rpmI+ STM1335 Ortholog of E. coli 50S ribosomal subunit protein A (AAC74787.1); Blastp hit to AAC74787.1 (65 aa), 100% identity in aa 1 - 65 50S ribosomal subunit protein L3511340
609 ybjR+ STM0931 Ortholog of E. coli putative regulator (AAC73954.1); Blastp hit to AAC73954.1 (276 aa), 81% identity in aa 1 - 276 putative aminidase5740
orfB+ STM0930 Ortholog of E. coli orf, hypothetical protein (AAC73953.1); Blastp hit to AAC73953.1 (107 aa), 94% identity in aa 1 - 107 putative cytoplasmic protein Putative RBS for ybjR; RegulonDB:STMS1H001222
1543 lrhA+ STM2330 Ortholog of E. coli NADH dehydrogenase transcriptional regulator, LysR family (AAC75349.1); Blastp hit to AAC75349.1 (312 aa), 86% identity in aa 1 - 312 NADH dehydrogenase transcriptional repressor (LysR family)14870
634 ycaM+ STM0969 Ortholog of E. coli putative transport (AAC73985.1); Blastp hit to AAC73985.1 (540 aa), 93% identity in aa 68 - 536 putative APC family, amino-acid transporter5960
1882 hydN+ STM2843 Ortholog of E. coli involved in electron transport from formate to hydrogen, Fe-S centers (AAC75755.1); Blastp hit to AAC75755.1 (175 aa), 95% identity in aa 1 - 173 electron transport protein (FeS senter) from formate to hydrogen17580
1966 lysA+ STM3013 Ortholog of E. coli diaminopimelate decarboxylase (AAC75877.1); Blastp hit to AAC75877.1 (420 aa), 88% identity in aa 1 - 420 diaminopimelate decarboxylase18250
261 phoB+ STM0397 Ortholog of E. coli positive response regulator for pho regulon, sensor is PhoR (or CreC) (AAC73502.1); Blastp hit to AAC73502.1 (229 aa), 95% identity in aa 1 - 229 response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family)2620
211 STM0327+ Paralog of E. coli orf, hypothetical protein (AAC74880.1); Blastp hit to AAC74880.1 (119 aa), 66% identity in aa 13 - 119 putative cytoplasmic protein11990
1430 yegV0 STM2144 Ortholog of E. coli putative kinase (AAC75161.1); Blastp hit to AAC75161.1 (321 aa), 76% identity in aa 1 - 321 putative sugar kinase13740
yegU+ STM2143 Ortholog of E. coli orf, hypothetical protein (AAC75160.1); Blastp hit to AAC75160.1 (334 aa), 83% identity in aa 1 - 334 putative glycohydrolase Putative RBS for yegV; RegulonDB:STMS1H002288
yegT0 STM2142 Ortholog of E. coli putative nucleoside permease protein (AAC75159.1); Blastp hit to AAC75159.1 (425 aa), 94% identity in aa 1 - 425 putative MFS family transport protein Putative RBS for yegU; RegulonDB:STMS1H002287
1414 wcaD0 STM2112 Ortholog of E. coli putative colanic acid polymerase (AAC75117.1); Blastp hit to AAC75117.1 (405 aa), 93% identity in aa 1 - 404 putative colanic acid polymerase13520
manC0 STM2105 S. typhimurium mannose-1-phosphate guanylyltransferase (GDP). (SW:MANC_SALTY) mannose-1-phosphate in colanic acid gene cluster
gmd+ STM2109 Ortholog of E. coli GDP-D-mannose dehydratase (AAC75114.1); Blastp hit to AAC75114.1 (373 aa), 96% identity in aa 1 - 373 GDP-D-mannose dehydratase in colanic acid gene cluster Putative RBS for wcaG; RegulonDB:STMS1H002254
wcaI0 STM2106 Ortholog of E. coli putative colanic biosynthesis glycosyl transferase (AAC75111.1); Blastp hit to AAC75111.1 (407 aa), 85% identity in aa 1 - 407 putative glycosyl transferase in colanic acid biosynthesis Putative RBS for manC; RegulonDB:STMS1H002251
wcaE0 STM2111 Ortholog of E. coli putative colanic acid biosynthesis glycosyl transferase (AAC75116.1); Blastp hit to AAC75116.1 (248 aa), 71% identity in aa 1 - 248 putative transferase in colanic acid biosynthesis
wcaA0 STM2115 Ortholog of E. coli putative regulator (AAC75120.1); Blastp hit to AAC75120.1 (279 aa), 91% identity in aa 3 - 279 putative glycosyl transferase in colanic acid biosynthesis Putative RBS for wcaB; RegulonDB:STMS1H002260
wcaH0 STM2107 Ortholog of E. coli GDP-mannose mannosyl hydrolase (AAC75112.1); Blastp hit to AAC75112.1 (160 aa), 78% identity in aa 15 - 149 GDP-mannose mannosyl hydrolase in colanic acid biosynthesis Putative RBS for wcaI; RegulonDB:STMS1H002252
wcaB0 STM2114 Ortholog of E. coli putative transferase (AAC75119.1); Blastp hit to AAC75119.1 (162 aa), 91% identity in aa 1 - 160 putative acyl transferase in colanic acid biosynthesis Putative RBS for wcaC; RegulonDB:STMS1H002259
wcaF0 STM2110 Ortholog of E. coli putative transferase (AAC75115.1); Blastp hit to AAC75115.1 (182 aa), 87% identity in aa 1 - 180 putative acyltransferase in colanic acid biosynthesis
wcaG0 STM2108 Ortholog of E. coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC75113.1); Blastp hit to AAC75113.1 (321 aa), 90% identity in aa 1 - 321 bifunctional GDP fucose synthetase in colanic acid biosyntheis Putative RBS for wcaH; RegulonDB:STMS1H002253
wcaC0 STM2113 Ortholog of E. coli putative glycosyl transferase (AAC75118.1); Blastp hit to AAC75118.1 (405 aa), 80% identity in aa 1 - 405 putative glycosyl transferase in colanic acid biosynthesis Putative RBS for wcaD; RegulonDB:STMS1H002258
2145 yhbO+ STM3269 Ortholog of E. coli orf, hypothetical protein (AAC76187.1); Blastp hit to AAC76187.1 (186 aa), 94% identity in aa 15 - 186 putative intracellular proteinase20310
2492 yidG0 STM3804 Ortholog of E. coli orf, hypothetical protein (AAC76698.1); Blastp hit to AAC76698.1 (120 aa), 82% identity in aa 1 - 116 putative inner membrane protein23460
yidF+ STM3803 Paralog of E. coli putative transcriptional regulator (AAC76697.1); Blastp hit to AAC76697.1 (165 aa), 48% identity in aa 1 - 165 putative cytoplasmic protein
yidH+ STM3805 Ortholog of E. coli orf, hypothetical protein (AAC76699.1); Blastp hit to AAC76699.1 (115 aa), 94% identity in aa 1 - 115 putative inner membrane protein Putative RBS for yidG; RegulonDB:STMS1H003770
2122 yqjD+ STM3229 Ortholog of E. coli orf, hypothetical protein (AAC76133.1); Blastp hit to AAC76133.1 (101 aa), 90% identity in aa 1 - 101 putative inner membrane protein20030
yqjK+ STM3231 Ortholog of E. coli orf, hypothetical protein (AAC76135.1); Blastp hit to AAC76135.1 (99 aa), 87% identity in aa 1 - 99 putative inner membrane protein
yqjE+ STM3230 Ortholog of E. coli orf, hypothetical protein (AAC76134.1); Blastp hit to AAC76134.1 (134 aa), 89% identity in aa 1 - 130 putative inner membrane protein Putative RBS for yqjK; RegulonDB:STMS1H003258
333 ybaL+ STM0492 Ortholog of E. coli putative transport protein (AAC73580.1); Blastp hit to AAC73580.1 (558 aa), 94% identity in aa 1 - 556 putative CPA2 family transport protein3210
1142 ycjI+ STM1680 Ortholog of E. coli putative carboxypeptidase (AAC74408.1); Blastp hit to AAC74408.1 (262 aa), 90% identity in aa 21 - 262 putative carboxypeptidase8650
1291 yebF+ STM1881 Ortholog of E. coli orf, hypothetical protein (AAC74917.1); Blastp hit to AAC74917.1 (122 aa), 76% identity in aa 5 - 122 putative periplasmic protein12270
2481 uhpC0 STM3788 S. typhimurium regulatory protein UHPC. (SW:UHPC_SALTY) membrane protein, regulator of uhpT expression Putative binding site for CRP, RegulonDB: STMS1H00010723420
uhpA0 STM3790 S. typhimurium transcriptional regulatory protein UHPA. (SW:UHPA_SALTY) response regulator (repressor) in two-component regulatory system wtih UhpB, regulates uhpT operon (LuxR*UhpA family) Putative RBS for uhpB; RegulonDB:STMS1H003758
uhpB+ STM3789 S. typhimurium sensor protein UHPB. (SW:UHPB_SALTY) sensory histidine kinase in two-component regulatory sytem with UhpA Putative RBS for uhpC; RegulonDB:STMS1H003757
970 gst+ STM1451 Ortholog of E. coli glutathionine S-transferase (AAC74707.1); Blastp hit to AAC74707.1 (201 aa), 84% identity in aa 1 - 200 glutathionine S-transferase10770
2978 yjiY+ STM4532 Ortholog of E. coli putative carbon starvation protein (AAC77310.1); Blastp hit to AAC77310.1 (721 aa), 96% identity in aa 6 - 721 putative carbon starvation protein28110
1429 fbaB+ STM2141 Ortholog of E. coli orf, hypothetical protein (AAC75158.1); Blastp hit to AAC75158.1 (374 aa), 96% identity in aa 25 - 374 3-oxoacyl-[acyl-carrier-protein] synthase I13730
1359 STM1988+ Ortholog of E. coli orf, hypothetical protein (AAC75023.1); Blastp hit to AAC75023.1 (60 aa), 83% identity in aa 1 - 59 putative cytoplasmic protein12930
yedI0 STM1989 Ortholog of E. coli orf, hypothetical protein (AAC75024.1); Blastp hit to AAC75024.1 (305 aa), 85% identity in aa 3 - 305 putative inner membrane protein
702 rmf+ STM1066 Ortholog of E. coli ribosome modulation factor (AAC74039.1); Blastp hit to AAC74039.1 (55 aa), 92% identity in aa 1 - 55 ribosome modulation factor (involved in dimerization of 70S ribosomes)6300
1264 STM1851+ Ortholog of E. coli orf, hypothetical protein (AAC74906.1); Blastp hit to AAC74906.1 (83 aa), 88% identity in aa 6 - 83 putative cytoplasmic protein12200
847 yaoF+ STM1275 Ortholog of E. coli orf, hypothetical protein (AAC74863.1); Blastp hit to AAC74863.1 (84 aa), 63% identity in aa 1 - 84 putative hemolysin11850
1533 elaB+ STM2311 Ortholog of E. coli orf, hypothetical protein (AAC75326.1); Blastp hit to AAC75326.1 (101 aa), 89% identity in aa 1 - 101 putative inner membrane protein14720
2982 mdoB+ STM4541 Ortholog of E. coli phosphoglycerol transferase I (AAC77315.1); Blastp hit to AAC77315.1 (750 aa), 92% identity in aa 1 - 749 phosphoglycerol transferase I28160
2557 ilvC+ STM3909 S. typhimurium ketol-acid reductoisomerase. (SW:ILVC_SALTY) ketol-acid reductoisomerase Putative -10_signal for ilvY; RegulonDB:STMLTH004629 Putative -35_signal for ilvY; RegulonDB:STMLTH00462924110
521 ybhB+ STM0792 Ortholog of E. coli orf, hypothetical protein (AAC73860.1); Blastp hit to AAC73860.1 (158 aa), 93% identity in aa 1 - 158 putative Phospholipid-binding protein5130
880 celC+ STM1314 Ortholog of E. coli PEP-dependent phosphotransferase enzyme III for cellobiose, arbutin, and salicin (AAC74806.1); Blastp hit to AAC74806.1 (116 aa), 87% identity in aa 1 - 115 PTS family, sugar specific enzyme III for cellobiose, arbutin, and salicin11490
celD0 STM1315 Ortholog of E. coli negative transcriptional regulator of cel operon (AAC74805.1); Blastp hit to AAC74805.1 (280 aa), 85% identity in aa 1 - 280 transcriptional repressor of cel operon (AraC*XylS family)
1623 crr+ STM2433 S. typhimurium PTS system, glucose-specific IIA component (EIIA-GLC) (glucose-permease IIA component) (phosphotransferase enzyme II, A component). (SW:PTGA_SALTY) PTS family, glucose-specific IIA component15750
963 slyA+ STM1444 S. typhimurium transcriptional regulator SLYA (salmolysin) (cytolysin SLYA). (SW:SLYA_SALTY) transcriptional regulator for hemolysin (MarR family)10840
2968 STM4519+ Paralog of E. coli putative aldehyde dehydrogenase (AAC74598.1); Blastp hit to AAC74598.1 (470 aa), 42% identity in aa 19 - 465 putative NAD-dependent aldehyde dehydrogenase9990
299 hupB+ STM0451 S. typhimurium DNA-binding protein HU-beta (NS1) (HU-1). (SW:DBHB_SALTY) DNA-binding protein HU-beta, NS1 (HU-1)2900
1767 yfiA+ STM2665 Ortholog of E. coli putative yhbH sigma 54 modulator (AAC75646.1); Blastp hit to AAC75646.1 (113 aa), 91% identity in aa 1 - 112 ribosome associated factor, stabilizes ribosomes against dissociation16800
yfiO0 STM2663 Ortholog of E. coli orf, hypothetical protein (AAC75644.1); Blastp hit to AAC75644.1 (245 aa), 96% identity in aa 1 - 245 putative lipoprotein
STM26640 pseudogene; two in-frame stops relative to E. coli b2596
2760 yjbA+ STM4226 Ortholog of E. coli orf, hypothetical protein (AAC77000.1); Blastp hit to AAC77000.1 (136 aa), 87% identity in aa 1 - 136 putative inner membrane protein25830
1620 cysK+ STM2430 S. typhimurium cysteine synthase A. (SW:CYSK_SALTY) subunit of cysteine synthase A and O-acetylserine sulfhydrolase A15720
1266 prpA+ STM1853 Ortholog of E. coli protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (AAC74908.1); Blastp hit to AAC74908.1 (219 aa), 63% identity in aa 2 - 219 serine*threonine protein phosphatase12210
1319 otsA+ STM1928 Ortholog of E. coli trehalose-6-phosphate synthase (AAC74966.1); Blastp hit to AAC74966.1 (474 aa), 88% identity in aa 1 - 474 trehalose-6-phosphate synthase12550
otsB0 STM1929 Ortholog of E. coli trehalose-6-phosphate phophatase, biosynthetic (AAC74967.1); Blastp hit to AAC74967.1 (266 aa), 72% identity in aa 1 - 266 trehalose-6-phosphate phophatase, biosynthetic Putative RBS for otsA; RegulonDB:STMS1H002091 Putative -10_signal for otsA; RegulonDB:STMLTH004519 Putative -35_signal for otsA; RegulonDB:STMLTH004519
1292 yebG+ STM1882 Ortholog of E. coli orf, hypothetical protein (AAC74918.1); Blastp hit to AAC74918.1 (96 aa), 79% identity in aa 1 - 96 DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS12280
1290 yebE+ STM1880 Ortholog of E. coli orf, hypothetical protein (AAC74916.1); Blastp hit to AAC74916.1 (219 aa), 86% identity in aa 1 - 217 putative inner membrane protein12260
1883 hycF0 STM2848 Ortholog of E. coli probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) (AAC75762.1); Blastp hit to AAC75762.1 (180 aa), 96% identity in aa 1 - 178 hydrogenase 3, putative quinone oxidoreductase Putative RBS for hycG; RegulonDB:STMS1H00291317610
hycD0 STM2850 Ortholog of E. coli membrane-spanning protein of hydrogenase 3 (part of FHL complex) (AAC75764.1); Blastp hit to AAC75764.1 (307 aa), 90% identity in aa 1 - 307 hydrogenase 3, membrane subunit (part of FHL complex)
hycG+ STM2847 Ortholog of E. coli hydrogenase activity (AAC75761.1); Blastp hit to AAC75761.1 (255 aa), 96% identity in aa 1 - 255 hydrogenase activity Putative RBS for hycH; RegulonDB:STMS1H002912
hycI0 STM2845 Ortholog of E. coli protease involved in processing C-terminal end of the large subunit of hydrogenase 3 (AAC75759.1); Blastp hit to AAC75759.1 (156 aa), 91% identity in aa 1 - 155 protease involved in processing C-terminal end of HycE
hycC0 STM2851 Ortholog of E. coli membrane-spanning protein of hydrogenase 3 (part of FHL complex) (AAC75765.1); Blastp hit to AAC75765.1 (608 aa), 88% identity in aa 1 - 608 hydrogenase 3, membrane subunit (part of FHL complex) Putative RBS for hycD; RegulonDB:STMS1H002915
STM28440 putative periplasmic or exported protein Putative RBS for STM2844; RegulonDB:STMS1H002910
hycH0 STM2846 Ortholog of E. coli processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex) (AAC75760.1); Blastp hit to AAC75760.1 (136 aa), 91% identity in aa 1 - 136 processing of HycE (part of the FHL complex) Putative RBS for hycI; RegulonDB:STMS1H002911
hycB0 STM2852 Ortholog of E. coli probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex) (AAC75766.1); Blastp hit to AAC75766.1 (203 aa), 95% identity in aa 1 - 202 hydrogenase-3, iron-sulfur subunit (part of FHL complex) Putative RBS for hycC; RegulonDB:STMS1H002916
hycE0 STM2849 Ortholog of E. coli large subunit of hydrogenase 3 (part of FHL complex) (AAC75763.1); Blastp hit to AAC75763.1 (569 aa), 97% identity in aa 1 - 569 hydrogenase 3, large subunit (part of FHL complex) Putative RBS for hycF; RegulonDB:STMS1H002914
467 kdpB+ STM0705 Ortholog of E. coli ATPase of high-affinity potassium transport system, B chain (AAC73791.1); Blastp hit to AAC73791.1 (682 aa), 91% identity in aa 1 - 681 P-type ATPase, high-affinity potassium transport system, B chain Putative RBS for kdpC; RegulonDB:STMS1H0010194680
kdpA0 STM0706 Ortholog of E. coli ATPase of high-affinity potassium transport system, A chain (AAC73792.1); Blastp hit to AAC73792.1 (557 aa), 85% identity in aa 1 - 557 P-type ATPase, high-affinity potassium transport system, A chain
STM07070 putative outer membrane protein Putative RBS for kdpA; RegulonDB:STMS1H001021 Putative -10_signal for kdpA; RegulonDB:STMLTH004695 Putative -35_signal for kdpA; RegulonDB:STMLTH004695
kdpC0 STM0704 Ortholog of E. coli high-affinity potassium transport system (AAC73790.1); Blastp hit to AAC73790.1 (190 aa), 77% identity in aa 1 - 188 P-type ATPase, high-affinity potassium transport system, C chain Putative RBS for kdpD; RegulonDB:STMS1H001018
kdpD0 STM0703 Ortholog of E. coli sensor for high-affinity potassium transport system (AAC73789.1); Blastp hit to AAC73789.1 (894 aa), 89% identity in aa 1 - 894 sensory kinase in two-component regulatory system wtih KdpE, regulates kdp operon (high-affinity potassium transport system) Putative RBS for kdpE; RegulonDB:STMS1H001017
kdpE0 STM0702 Ortholog of E. coli regulator of kdp operon (transcriptional effector) (AAC73788.1); Blastp hit to AAC73788.1 (225 aa), 91% identity in aa 1 - 224 response regulator in two-component regulatory system with KdpD, regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family)
2985 yjjP+ STM4546 Ortholog of E. coli putative structural protein (AAC77320.1); Blastp hit to AAC77320.1 (277 aa), 90% identity in aa 19 - 277 paral putative membrane protein Putative RBS for STM4545; RegulonDB:STMS1H00441128200
STM45450 Ortholog of E. coli orf, hypothetical protein (AAC77319.1); Blastp hit to AAC77319.1 (108 aa), 89% identity in aa 1 - 108 putative inner membrane protein
508 gpmA+ STM0772 Ortholog of E. coli phosphoglyceromutase 1 (AAC73842.1); Blastp hit to AAC73842.1 (250 aa), 98% identity in aa 1 - 250 phosphoglyceromutase 15000
1219 treA+ STM1796 Ortholog of E. coli trehalase, periplasmic (AAC74281.1); Blastp hit to AAC74281.1 (565 aa), 82% identity in aa 11 - 553 trehalase, periplasmic7810
2995 osmY+ STM4561 Ortholog of E. coli hyperosmotically inducible periplasmic protein (AAC77329.1); Blastp hit to AAC77329.1 (201 aa), 89% identity in aa 1 - 201 hyperosmotically inducible periplasmic protein, RpoS-dependent stationary phase gene28270
2887 msrA+ STM4408 Ortholog of E. coli peptide methionine sulfoxide reductase (AAC77176.1); Blastp hit to AAC77176.1 (212 aa), 89% identity in aa 1 - 212 peptide methionine sulfoxide reductase27130
1628 cysP+ STM2444 S. typhimurium thiosulfate-binding protein precursor. (SW:CYSP_SALTY) ABC superfamily (bind_prot), thiosulfate transport protein Putative RBS for cysU; RegulonDB:STMS1H00256315790
cysA+ STM2441 S. typhimurium sulfate transport atp-binding protein CYSA. (SW:CYSA_SALTY) ABC superfamily (atp_bind), sulfate permease A protein; chromate resistance
cysU0 STM2443 Ortholog of E. coli sulfate, thiosulfate transport system permease T protein (AAC75477.1); Blastp hit to AAC75477.1 (277 aa), 95% identity in aa 1 - 277 ABC superfamily (membrane), thiosulfate transport protein Putative RBS for cysW; RegulonDB:STMS1H002562
cysW0 STM2442 Ortholog of E. coli sulfate transport system permease W protein (AAC75476.1); Blastp hit to AAC75476.1 (149 aa), 99% identity in aa 1 - 149 ABC superfamily (membrane), thiosulfate permease W protein Putative RBS for cysA; RegulonDB:STMS1H002561
1077 ydcR+ STM1598 Ortholog of E. coli multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system (AAC74521.1); Blastp hit to AAC74521.1 (468 aa), 87% identity in aa 1 - 468 putative regulatory protein, gntR family9430
877 osmE+ STM1311 Ortholog of E. coli activator of ntrL gene (AAC74809.1); Blastp hit to AAC74809.1 (112 aa), 96% identity in aa 1 - 112 transcriptional activator of ntrL gene11520
2026 galP+ STM3091 Ortholog of E. coli galactose-proton symport of transport system (AAC75980.1); Blastp hit to AAC75980.1 (464 aa), 97% identity in aa 1 - 464 MFS family, galactose:proton symporter18970
2519 yieF+ STM3850 Ortholog of E. coli orf, hypothetical protein (AAC76736.1); Blastp hit to AAC76736.1 (188 aa), 92% identity in aa 1 - 187 putative oxidoreductase23700
yieE0 STM3849 Ortholog of E. coli orf, hypothetical protein (AAC76735.1); Blastp hit to AAC76735.1 (253 aa), 77% identity in aa 5 - 253 putative cytoplasmic protein
250 psiF+ STM0384 Ortholog of E. coli induced by phosphate starvation (AAC73487.1); Blastp hit to AAC73487.1 (112 aa), 90% identity in aa 7 - 112 induced by phosphate starvation2490
2690 frwB+ STM4113 Ortholog of E. coli PTS system fructose-like IIB component 1 (AAC76932.1); Blastp hit to AAC76932.1 (106 aa), 96% identity in aa 1 - 106 PTS system fructose-like IIB component 125250
frwC0 STM4112 Ortholog of E. coli PTS system, fructose-like enzyme II component (AAC76931.1); Blastp hit to AAC76931.1 (359 aa), 93% identity in aa 1 - 359 PTS system fructose-like IIC component
928 lpp+ STM1377 Ortholog of E. coli murein lipoprotein (AAC74747.1); Blastp hit to AAC74747.1 (78 aa), 96% identity in aa 1 - 78 murein lipoprotein, links outer and inner membranes11100
1853 ygaM+ STM2802 Ortholog of E. coli orf, hypothetical protein (AAC75719.1); Blastp hit to AAC75719.1 (113 aa), 86% identity in aa 1 - 112 putative inner membrane protein17310
927 lppB+ STM1376 Paralog of E. coli murein lipoprotein (AAC74747.1); Blastp hit to AAC74747.1 (78 aa), 88% identity in aa 2 - 71 putative methyl-accepting chemotaxis protein11100
1931 ygcA+ STM2957 Ortholog of E. coli putative enzyme (AAC75827.1); Blastp hit to AAC75827.1 (433 aa), 84% identity in aa 1 - 432 putative RNA methyltransferase Putative -10_signal for relA; RegulonDB:STMLTH004568 Putative -35_signal for relA; RegulonDB:STMLTH00456817940
925 sufD0 STM1372 Ortholog of E. coli orf, hypothetical protein (AAC74751.1); Blastp hit to AAC74751.1 (423 aa), 79% identity in aa 1 - 421 required for stability of iron-sulfur component of FhuF Putative RBS for sufS; RegulonDB:STMS1H00161411120
ynhA+ STM1374 Ortholog of E. coli orf, hypothetical protein (AAC74749.1); Blastp hit to AAC74749.1 (138 aa), 87% identity in aa 1 - 138 putative SufE protein probably involved in Fe-S center assembly
sufC0 STM1371 Ortholog of E. coli putative ATP-binding component of a transport system (AAC74752.1); Blastp hit to AAC74752.1 (248 aa), 92% identity in aa 1 - 248 putative ABC superfamily (atp_bind) transport protein Putative RBS for sufD; RegulonDB:STMS1H001613
sufS0 STM1373 Ortholog of E. coli orf, hypothetical protein (AAC74750.1); Blastp hit to AAC74750.1 (406 aa), 87% identity in aa 1 - 406 selenocysteine lyase
sufA0 STM1369 Ortholog of E. coli orf, hypothetical protein (AAC74754.1); Blastp hit to AAC74754.1 (122 aa), 84% identity in aa 1 - 122 putative HesB-like domain Putative RBS for sufB; RegulonDB:STMS1H001611
sufB0 STM1370 Ortholog of E. coli orf, hypothetical protein (AAC74753.1); Blastp hit to AAC74753.1 (508 aa), 96% identity in aa 14 - 508 putative ABC transporter
1557 yfcF+ STM2348 Ortholog of E. coli orf, hypothetical protein (AAC75361.1); Blastp hit to AAC75361.1 (214 aa), 80% identity in aa 1 - 214 putataive glutathione-S-transferase14980

 [top] Indirectly PhoP regulated in S. typhimurium, and PhoP motif found in E. coli
OperonIDgeneexpressionfunctionOrthologsmotif
298 lon+ STM0450 Ortholog of E. coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); Blastp hit to AAC73542.1 (784 aa), 99% identity in aa 1 - 784 DNA-binding, ATP-dependent protease la; cleaves RcsA and SulA, heat shock k-protein (DNA binding activity)2891
1246 STM1829+ putative cytoplasmic protein Putative RBS for yoaE; RegulonDB:STMS1H002000 Putative binding site for NagC, RegulonDB: STMS1H000303 Putative binding site for CRP, RegulonDB: STMS1H000041 Putative -35_signal for manX; RegulonDB:STMLTH004514 Putative -10_signal for manX; RegulonDB:STMLTH004514 Putative binding site for CRP, RegulonDB: STMS1H00003712041
yoaE+ STM1828 Ortholog of E. coli putative transport protein (AAC74886.1); Blastp hit to AAC74886.1 (518 aa), 90% identity in aa 1 - 518 putative inner membrane protein
966 ydhA+ STM1447 Ortholog of E. coli orf, hypothetical protein (AAC74711.1); Blastp hit to AAC74711.1 (82 aa), 90% identity in aa 1 - 82 putative outer membrane lipoprotein10811
1558 yfcG+ STM2349 Ortholog of E. coli putative S-transferase (AAC75362.1); Blastp hit to AAC75362.1 (215 aa), 83% identity in aa 1 - 208 putative glutathione S-transferase14991
947 ribE+ STM1426 Ortholog of E. coli riboflavin synthase, alpha chain (AAC74734.1); Blastp hit to AAC74734.1 (213 aa), 90% identity in aa 1 - 208 riboflavin synthase, alpha chain11011
2249 fkpA+ STM3453 Ortholog of E. coli FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (AAC76372.1); Blastp hit to AAC76372.1 (270 aa), 90% identity in aa 1 - 270 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)21361
881 celG0 STM1317 Ortholog of E. coli orf, hypothetical protein (AAC74803.1); Blastp hit to AAC74803.1 (249 aa), 76% identity in aa 1 - 249 putative glucosidase11481
celF+ STM1316 Ortholog of E. coli phospho-beta-glucosidase; cryptic (AAC74804.1); Blastp hit to AAC74804.1 (450 aa), 90% identity in aa 1 - 450 phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
688 sodC+ STM1044 S. typhimurium superoxide dismutase [Cu-Zn] precursor. (SW:SODC_SALTY) Gifsy-2 prophage: superoxide dismutase precursor (Cu-Zn)10861
1863 luxS+ STM2817 Ortholog of E. coli orf, hypothetical protein (AAC75734.1); Blastp hit to AAC75734.1 (171 aa), 94% identity in aa 1 - 171 quorum sensing protein, produces autoinducer - acyl-homoserine lactone-signaling molecules17391

 [top] Directly PhoP regulated in S. typhimurium and no PhoP motif found in E. coli
OperonIDgeneexpressionfunctionOrthologsmotif
2343 uspB+ STM3590 Ortholog of E. coli orf, hypothetical protein (AAC76519.1); Blastp hit to AAC76519.1 (111 aa), 95% identity in aa 1 - 111 universal stress protein B, involved in stationary-phase resistance to ethanol22220
2670 yiiU+ STM4088 Ortholog of E. coli orf, hypothetical protein (AAC76910.1); Blastp hit to AAC76910.1 (81 aa), 94% identity in aa 3 - 81 putative cytoplasmic protein25080
1111 ldhA+ STM1647 Ortholog of E. coli fermentative D-lactate dehydrogenase, NAD-dependent (AAC74462.1); Blastp hit to AAC74462.1 (329 aa), 94% identity in aa 1 - 328 fermentative D-lactate dehydrogenase, NAD-dependent9040
1922 cysJ+ STM2948 S. typhimurium sulfite reductase [NADPH] flavoprotein alpha-component. (SW:CYSJ_SALTY) sulfite reductase, beta (flavoprotein) subunit Putative RBS for cysI; RegulonDB:STMS1H00300317810
cysI0 STM2947 S. typhimurium sulfite reductase [NADPH] hemoprotein beta-component. (SW:CYSI_SALTY) sulfite reductase, alpha subunit, NADPH dependent
234 yahO+ STM0366 Ortholog of E. coli orf, hypothetical protein (AAC73432.1); Blastp hit to AAC73432.1 (91 aa), 72% identity in aa 1 - 91 putative periplasmic protein2150
2631 yihX+ STM4026 Ortholog of E. coli putative phosphatase (AAD13447.1); Blastp hit to AAD13447.1 (206 aa), 89% identity in aa 8 - 206 paral putative enzyme Putative RBS for rbn; RegulonDB:STMS1H00395724810
yiiD0 STM4029 Ortholog of E. coli putative acetyltransferase (AAD13450.1); Blastp hit to AAD13450.1 (329 aa), 93% identity in aa 1 - 329 putative acetyltransferase
rbn+ STM4027 Ortholog of E. coli tRNA processing exoribonuclease BN (AAD13448.1); Blastp hit to AAD13448.1 (290 aa), 93% identity in aa 1 - 290 tRNA processing exoribonuclease BN Putative RBS for yihZ; RegulonDB:STMS1H003959
yihZ0 STM4028 Ortholog of E. coli orf, hypothetical protein (AAD13449.1); Blastp hit to AAD13449.1 (145 aa), 91% identity in aa 1 - 145 D-Tyr-tRNA(Tyr) deacylase Putative RBS for yiiD; RegulonDB:STMS1H003960
1856 nrdH+ STM2805 S. typhimurium glutaredoxin-like protein NRDH. (SW:NRDH_SALTY) glutaredoxin-like protein; hydrogen donor Putative RBS for nrdI; RegulonDB:STMS1H00287617320
nrdF+ STM2808 S. typhimurium ribonucleoside-diphosphate reductase 2 beta chain. (SW:RIR4_SALTY) ribonucleoside-diphosphate reductase 2, beta subunit
nrdI+ STM2806 S. typhimurium NRDI protein. (SW:NRDI_SALTY) stimulates ribonucleotide reduction Putative RBS for nrdE; RegulonDB:STMS1H002877
nrdE0 STM2807 S. typhimurium ribonucleoside-diphosphate reductase 2 alpha chain. (SW:RIR3_SALTY) ribonucleoside diphosphate reductase 2, alpha subunit Putative RBS for nrdF; RegulonDB:STMS1H002878
1529 STM23020 S. typhimurium unknown (gi|2921424) putative inner membrane protein Putative RBS for STM2303; RegulonDB:STMS1H00243414680
yfbE0 STM2297 Ortholog of E. coli putative enzyme (AAC75313.1); Blastp hit to AAC75313.1 (390 aa), 82% identity in aa 6 - 390 putative DegT*DnrJ*EryC1*StrS family Putative RBS for pmrF; RegulonDB:STMS1H002430
pmrF0 STM2298 Ortholog of E. coli putative sugar transferase (AAC75314.1); Blastp hit to AAC75314.1 (322 aa), 87% identity in aa 1 - 318 putative glycosyl transferase Putative RBS for yfbG; RegulonDB:STMS1H002431
yfbG0 STM2299 S. typhimurium hypothetical 73.6 Kda protein in ais-pmrD intergenic region. (SW:YFBG_SALTY) paral putative transformylase Putative RBS for STM2300; RegulonDB:STMS1H002432
pqaB0 STM2301 Ortholog of E. coli orf, hypothetical protein (AAC75317.1); Blastp hit to AAC75317.1 (550 aa), 71% identity in aa 1 - 550 putative melittin resistance protein, PqaB, affects polymycin B resistance and lipopolysaccharide synthesis
STM2303+ Ortholog of E. coli putative transport*receptor protein (AAC75318.1); Blastp hit to AAC75318.1 (222 aa), 68% identity in aa 95 - 216 putative inner membrane protein
STM23000 Ortholog of E. coli orf, hypothetical protein (AAC75316.1); Blastp hit to AAC75316.1 (296 aa), 73% identity in aa 1 - 295 putative cytoplasmic protein Putative RBS for pqaB; RegulonDB:STMS1H002433
909 pps+ STM1349 Ortholog of E. coli phosphoenolpyruvate synthase (AAC74772.1); Blastp hit to AAC74772.1 (792 aa), 96% identity in aa 1 - 792 phosphoenolpyruvate synthase11220
616 ybjY0 STM0941 Ortholog of E. coli putative membrane protein (AAC73965.1); Blastp hit to AAC73965.1 (380 aa), 83% identity in aa 12 - 378 paral putative membrane protein Putative RBS for ybjZ; RegulonDB:STMS1H0012325820
ybjZ+ STM0942 Ortholog of E. coli putative ATP-binding component of a transport system (AAC73966.1); Blastp hit to AAC73966.1 (648 aa), 83% identity in aa 1 - 648 putative ABC superfamily (atp&memb) transport protein
1917 ygbE0 STM2932 Ortholog of E. coli putative cytochrome oxidase subunit (AAC75791.1); Blastp hit to AAC75791.1 (107 aa), 66% identity in aa 1 - 107 putative inner membrane protein17760
cysN+ STM2934 Ortholog of E. coli ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase (AAC75793.1); Blastp hit to AAC75793.1 (475 aa), 87% identity in aa 1 - 475 ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) Putative RBS for cysC; RegulonDB:STMS1H002990
cysC0 STM2933 Ortholog of E. coli adenosine 5-phosphosulfate kinase (AAC75792.1); Blastp hit to AAC75792.1 (201 aa), 85% identity in aa 1 - 201 adenosine 5-phosphosulfate kinase
cysD+ STM2935 Ortholog of E. coli ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2 (AAC75794.1); Blastp hit to AAC75794.1 (302 aa), 97% identity in aa 1 - 302 ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) Putative RBS for cysN; RegulonDB:STMS1H002991
1403 udg+ STM2080 S. typhimurium UDP-glucose 6-dehydrogenase. (SW:UDG_SALTY) UDP-glucose*GDP-mannose dehydrogenase13430
900 pheS0 STM1337 Ortholog of E. coli phenylalanine tRNA synthetase, alpha-subunit (AAC74784.1); Blastp hit to AAC74784.1 (327 aa), 97% identity in aa 1 - 327 phenylalanine tRNA synthetase, alpha-subunit11310
pheT0 STM1338 S. typhimurium phenylalanyl-tRNA synthetase beta chain. (SW:SYFB_SALTY) phenylalanine tRNA synthetase, beta-subunit Putative -35_signal for himA; RegulonDB:STMLTH004484 Putative -10_signal for himA; RegulonDB:STMLTH004484 Putative RBS for himA; RegulonDB:STMS1H001586
himA+ STM1339 S. typhimurium integration host factor alpha-subunit (IHF-alpha). (SW:IHFA_SALTY) integration host factor (IHF), alpha subunit

 [top] Directly PhoP regulated in S. typhimurium and PhoP motif found in E. coli
OperonIDgeneexpressionfunctionOrthologsmotif
522 bioA+ STM0793 Ortholog of E. coli 7,8-diaminopelargonic acid synthetase (AAC73861.1); Blastp hit to AAC73861.1 (429 aa), 86% identity in aa 1 - 427 7,8-diaminopelargonic acid synthetase5141
584 artP0 STM0891 Ortholog of E. coli ATP-binding component of 3rd arginine transport system (AAC73951.1); Blastp hit to AAC73951.1 (242 aa), 95% identity in aa 1 - 242 ABC superfamily (atp&memb), arginine transport system5721
artQ0 STM0889 Ortholog of E. coli arginine 3rd transport system permease protein (AAC73949.1); Blastp hit to AAC73949.1 (238 aa), 94% identity in aa 1 - 237 ABC superfamily (membrane), arginine 3rd transport system Putative RBS for artM; RegulonDB:STMS1H001183
artM0 STM0888 Ortholog of E. coli arginine 3rd transport system permease protein (AAC73948.1); Blastp hit to AAC73948.1 (222 aa), 94% identity in aa 1 - 222 ABC superfamily (membrane), arginine 3rd transport system
artI+ STM0890 Ortholog of E. coli arginine 3rd transport system periplasmic binding protein (AAC73950.1); Blastp hit to AAC73950.1 (243 aa), 95% identity in aa 1 - 243 ABC superfamily (bind_prot), arginine transport system Putative RBS for artQ; RegulonDB:STMS1H001184
2112 oat+ STM3218 Ortholog of E. coli probable ornithine aminotransferase (AAC76108.1); Blastp hit to AAC76108.1 (496 aa), 94% identity in aa 68 - 495 putative acetylornithine aminotransferase19841
1530 pmrD+ STM2304 S. typhimurium polymyxin b resistance protein PMRD. (SW:PMRD_SALTY) polymyxin resistance protein B14691
1205 chaB+ STM1770 Ortholog of E. coli cation transport regulator (AAC74301.1); Blastp hit to AAC74301.1 (76 aa), 84% identity in aa 1 - 75 cation transport regulator7941
874 spy+ STM1308 Ortholog of E. coli periplasmic protein related to spheroblast formation (AAC74813.1); Blastp hit to AAC74813.1 (161 aa), 89% identity in aa 1 - 161 periplasmic protein related to spheroblast formation11561