| S. typhimurium | E. coli |
| OperonID | gene | expression | function | OperonID | gene | expression | function |
|---|
Indirectly PhoPQ regulated genes in S. typhimurium and E. coli
2001 | gcvH | + | STM3054 Ortholog of E. coli in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor (AAC75942.1); Blastp hit to AAC75942.1 (129 aa), 99% identity in aa 1 - 129 glycine cleavage complex protein H, carrier of aminomethyl moiety via covalently bound lipoyl cofactor | 1872 | gcvH | 0 | b2904 100 pct identical to GCSH_ECOLI SW: P23884 in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor | gcvT | 0 | STM3055 Ortholog of E. coli aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system (AAC75943.1); Blastp hit to AAC75943.1 (364 aa), 94% identity in aa 1 - 364 glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent | gcvT | 0 | STM3055 Ortholog of E. coli aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system (AAC75943.1); Blastp hit to AAC75943.1 (364 aa), 94% identity in aa 1 - 364 glycine cleavage complex protein T, aminomethyltransferase, tetrahydrofolate-dependent | 1553 | STM2344 | + | Paralog of E. coli putative PTS system enzyme II A component (AAC77152.1); Blastp hit to AAC77152.1 (154 aa), 41% identity in aa 12 - 149 putative phosphotransferase system | 1889 | cmtB | 0 | b2934 f147; 100 pct identical to PTYA_ECOLI SW: P32058; alternate name tolM; putative enzyme III of PEP- phosphotransferase system(PTS) PTS system, mannitol-specific enzyme II component, cryptic |
| | | cmtA | + | b2933 f462; Residues 1-415 99 pct identical (1 gap) toPTYC_ECOLI SW: P32059 but C-termini differ due to vector contamination in the database entry; alternate name tolM PTS system, mannitol-specific enzyme II component, cryptic |
2761 | malG | + | STM4227 S. typhimurium maltose transport system permease protein MALG. (SW:MALG_SALTY) ABC superfamily (membrane), maltose transport protein | 2585 | malG | + | b4032 f296; 100 pct identical to MALG_ECOLI SW: P07622; CG Site No. 530 part of maltose permease, inner membrane | malF | 0 | STM4228 S. typhimurium maltose transport system permease protein MALF. (SW:MALF_SALTY) ABC superfamily (membrane), maltose transport protein Putative RBS for malG; RegulonDB:STMS1H004133 | malF | 0 | STM4228 S. typhimurium maltose transport system permease protein MALF. (SW:MALF_SALTY) ABC superfamily (membrane), maltose transport protein Putative RBS for malG; RegulonDB:STMS1H004133 | 1590 | pgtE | + | STM2395 S. typhimurium outer membrane protease E precursor. (SW:PGTE_SALTY) Phosphoglycerate transport: outer membrane protein E | 376 | ompT | + | b0565 f317; 100 pct identical to OMPT_ECOLI SW: P09169 outer membrane protein 3b (a), protease VII | 509 | galE | 0 | STM0776 S. typhimurium UDP-glucose 4-epimerase. (SW:GALE_SALTY) UDP-galactose 4-epimerase Putative RBS for galT; RegulonDB:STMS1H001076 Putative binding site for GalR, RegulonDB: STMS1H000195 | 501 | galE | 0 | b0759 f338; 100 pct identical to GALE_ECOLI SW: P09147; alternate gene name galD UDP-galactose-4-epimerase | galK | 0 | STM0774 S. typhimurium galactokinase. (SW:GAL1_SALTY) galactokinase Putative RBS for galM; RegulonDB:STMS1H001074 | galK | 0 | STM0774 S. typhimurium galactokinase. (SW:GAL1_SALTY) galactokinase Putative RBS for galM; RegulonDB:STMS1H001074 | galT | + | STM0775 S. typhimurium galactose-1-phosphate uridylyltransferase. (SW:GAL7_SALTY) galactose-1-phosphate uridylyltransferase Putative RBS for galK; RegulonDB:STMS1H001075 | galT | + | STM0775 S. typhimurium galactose-1-phosphate uridylyltransferase. (SW:GAL7_SALTY) galactose-1-phosphate uridylyltransferase Putative RBS for galK; RegulonDB:STMS1H001075 | 2143 | yraO | + | STM3266 Ortholog of E. coli orf, hypothetical protein (AAC76183.1); Blastp hit to AAC76183.1 (196 aa), 98% identity in aa 3 - 196 putative phosphoheptose isomerase Putative RBS for yraP; RegulonDB:STMS1H003293 | 2028 | yraO | 0 | b3149 o196; 100 pct identical amino acid sequence and equal length to YRAO_ECOLI SW: P45466 orf, hypothetical protein | | yraN | 0 | STM3265 Ortholog of E. coli orf, hypothetical protein (AAC76182.1); Blastp hit to AAC76182.1 (131 aa), 83% identity in aa 1 - 131 putative endonuclease | yraN | 0 | STM3265 Ortholog of E. coli orf, hypothetical protein (AAC76182.1); Blastp hit to AAC76182.1 (131 aa), 83% identity in aa 1 - 131 putative endonuclease |
yraP | + | STM3267 Ortholog of E. coli putative periplasmic protein (AAC76184.1); Blastp hit to AAC76184.1 (191 aa), 92% identity in aa 1 - 191 paral putative periplasmic protein | yraP | + | STM3267 Ortholog of E. coli putative periplasmic protein (AAC76184.1); Blastp hit to AAC76184.1 (191 aa), 92% identity in aa 1 - 191 paral putative periplasmic protein | 523 | bioF | + | STM0795 Ortholog of E. coli 8-amino-7-oxononanoate synthase (AAC73863.1); Blastp hit to AAC73863.1 (384 aa), 80% identity in aa 1 - 384 7-keto-8-aminopelargonic acid synthetase Putative RBS for bioC; RegulonDB:STMS1H001097 | 515 | bioF | 0 | b0776 o384; 100 pct identical to BIOF_ECOLI SW: P12998 8-amino-7-oxononanoate synthase | bioC | + | STM0796 Ortholog of E. coli biotin biosynthesis; reaction prior to pimeloyl CoA (AAC73864.1); Blastp hit to AAC73864.1 (251 aa), 70% identity in aa 1 - 251 biotin biosynthesis; reaction prior to pimeloyl CoA Putative RBS for bioD; RegulonDB:STMS1H001098 | bioC | + | STM0796 Ortholog of E. coli biotin biosynthesis; reaction prior to pimeloyl CoA (AAC73864.1); Blastp hit to AAC73864.1 (251 aa), 70% identity in aa 1 - 251 biotin biosynthesis; reaction prior to pimeloyl CoA Putative RBS for bioD; RegulonDB:STMS1H001098 | bioB | + | STM0794 Ortholog of E. coli biotin synthesis, sulfur insertion? (AAC73862.1); Blastp hit to AAC73862.1 (346 aa), 94% identity in aa 1 - 346 biotin synthetase Putative RBS for bioF; RegulonDB:STMS1H001096 | bioB | + | STM0794 Ortholog of E. coli biotin synthesis, sulfur insertion? (AAC73862.1); Blastp hit to AAC73862.1 (346 aa), 94% identity in aa 1 - 346 biotin synthetase Putative RBS for bioF; RegulonDB:STMS1H001096 | bioD | + | STM0797 Ortholog of E. coli dethiobiotin synthetase (AAC73865.1); Blastp hit to AAC73865.1 (225 aa), 74% identity in aa 1 - 225 dethiobiotin synthetase | bioD | + | STM0797 Ortholog of E. coli dethiobiotin synthetase (AAC73865.1); Blastp hit to AAC73865.1 (225 aa), 74% identity in aa 1 - 225 dethiobiotin synthetase | 566 | dacC | + | STM0863 Ortholog of E. coli D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 (AAC73926.1); Blastp hit to AAC73926.1 (400 aa), 92% identity in aa 1 - 400 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a | 555 | dacC | + | b0839 o400; 99 pct identical to DACC_ECOLI SW: P08506 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 | 2532 | atpH | 0 | STM3868 Ortholog of E. coli membrane-bound ATP synthase, F1 sector, delta-subunit (AAC76758.1); Blastp hit to AAC76758.1 (177 aa), 94% identity in aa 1 - 177 membrane-bound ATP synthase, F1 sector, delta-subunit | 2385 | atpH | 0 | b3735 f177; 100 pct identical to ATPD_ECOLI SW: P00831; alternate gene names uncH, papE; CG Site No. 26 membrane-bound ATP synthase, F1 sector, delta-subunit | atpA | + | STM3867 Ortholog of E. coli membrane-bound ATP synthase, F1 sector, alpha-subunit (AAC76757.1); Blastp hit to AAC76757.1 (513 aa), 98% identity in aa 1 - 513 membrane-bound ATP synthase, F1 sector, alpha-subunit | atpA | + | STM3867 Ortholog of E. coli membrane-bound ATP synthase, F1 sector, alpha-subunit (AAC76757.1); Blastp hit to AAC76757.1 (513 aa), 98% identity in aa 1 - 513 membrane-bound ATP synthase, F1 sector, alpha-subunit | atpF | 0 | STM3869 Ortholog of E. coli membrane-bound ATP synthase, F0 sector, subunit b (AAC76759.1); Blastp hit to AAC76759.1 (156 aa), 96% identity in aa 1 - 156 membrane-bound ATP synthase, F0 sector, subunit b Putative RBS for atpH; RegulonDB:STMS1H003824 | atpF | 0 | STM3869 Ortholog of E. coli membrane-bound ATP synthase, F0 sector, subunit b (AAC76759.1); Blastp hit to AAC76759.1 (156 aa), 96% identity in aa 1 - 156 membrane-bound ATP synthase, F0 sector, subunit b Putative RBS for atpH; RegulonDB:STMS1H003824 | 1642 | talA | + | STM2473 Ortholog of E. coli transaldolase A (AAC75517.1); Blastp hit to AAC75517.1 (316 aa), 89% identity in aa 1 - 316 transaldolase A | 1890 | tktA | + | b2935 f663; differs from earlier version (TKT1_ECOLI SW:P27302); CG Site No. 103 transketolase 1 isozyme | tktB | + | STM2474 Ortholog of E. coli transketolase 2 isozyme (AAC75518.1); Blastp hit to AAC75518.1 (667 aa), 92% identity in aa 1 - 666 transketolase 2, isozyme | tktB | 0 | b2465 o667; 100 pct identical to TKT2_ECOLI SW: P33570 transketolase 2 isozyme |