The effect of orthology and coregulation on detecting regulatory motifs

Valerie Storms, Marleen Claeys, Aminael Sanchez, Bart De Moor, Annemieke Verstuyf, Kathleen Marchal

The Synthetic and Real datasets as described in the article are here available for download:

Synthetic data (100 datasets per test setting):

1. Coregulation space
2. Combined coregulation-orthology space: Star topology equal distances - Star topology unequal distances - Non-star like topology
3. Orthologous space

Real data (1 dataset per test setting):

• Gamma-proteobacterial species
  
  1. Coregulation space
  2. Combined coregulation-orthology space
  3. Orthologous space
• Saccharomyces species
  
  1. Coregulation space
  2. Combined coregulation-orthology space
  3. Orthologous space