Table 1: Detailed overview of the benchmark data sets.
(a) Name of the gene under study; (b) Ensembl Gene IDs of the different orthologs in human, mouse, rat, chimp and pufferfish making up the benchmark data sets; (c) Chromosome on which the ortholog is located; (d) start of the gene, i.e. (e) end of the gene; (f) strand on which the gene is located; (g) the stop position of the 5’ UTR; (h) start of the selected intergenic region and (i) end position of the selected intergenic region.
*
The Fugu scl ortholog is the only exception for which the
GenBank information is given: accession number (a)
back
|
Gene (a) |
EnsemblGeneId (b) |
Chr (c) |
start CDS (d) |
stop CDS (e) |
Strand (f) |
5' UTR (g) |
start int (h) |
stop int (i) |
|
cfos |
ENSG00000170345 |
14 |
73735572 |
73738948 |
1 |
73735726 |
73695572 |
73735726 |
|
|
12 |
81466261 |
81469629 |
1 |
81466399 |
81433242 |
81466399 |
|
|
|
ENSRNOG00000008015 |
6 |
109562610 |
109566002 |
1 |
109562742 |
109522610 |
109562742 |
|
|
ENSPTRG00000006553 |
15 |
74847955 |
74851330 |
1 |
74848109 |
74807955 |
74848109 |
|
|
SINFRUG00000132418 |
scaffold_164 |
262211 |
264241 |
-1 |
/ |
264241 |
267847 |
|
|
SINFRUG00000132419 |
scaffold_164 |
267847 |
269581 |
1 |
/ |
264241 |
267847 |
|
|
scaffold_75 |
118455 |
120136 |
-1 |
/ |
120136 |
121380 |
|
|
|
|
|
|
|
|
|
|
|
|
hoxb2 |
ENSG00000173917 |
17 |
47094659 |
47097030 |
-1 |
47096912 |
47096912 |
47101885 |
|
|
ENSMUSG00000047830 |
11 |
95934139 |
95937272 |
1 |
95936757 |
95930013 |
95936757 |
|
|
ENSRNOG00000008365 |
10 |
85101118 |
85101603 |
1 |
/ |
85093478 |
85101118 |
|
|
ENSPTRG00000009352 |
19_random |
42925219 |
42925728 |
-1 |
/ |
42925728 |
42930606 |
|
|
SINFRUG00000136637 |
scaffold_706 |
93771 |
96291 |
1 |
/ |
54552 |
93771 |
|
|
|
|
|
|
|
|
|
|
|
pax6 |
ENSG00000007372 |
11 |
31775791 |
31797074 |
-1 |
31796972 |
31796972 |
31837074 |
|
|
ENSMUSG00000027168 |
2 |
105932344 |
105960811 |
1 |
/ |
105892344 |
105932344 |
|
|
ENSRNOG00000004410 |
3 |
91023828 |
91045779 |
1 |
/ |
90983828 |
91023828 |
|
|
ENSPTRG00000003474 |
9 |
32113516 |
32135710 |
-1 |
/ |
32135710 |
32175710 |
|
|
SINFRUG00000121553 |
scaffold_227 |
2731 |
10658 |
-1 |
/ |
10658 |
31862 |
|
|
|
|
|
|
|
|
|
|
|
scl |
ENSG00000162367 |
1 |
47051881 |
47065360 |
-1 |
47064785 |
47064785 |
47085766 |
|
|
ENSMUSG00000028717 |
4 |
113968083 |
113980311 |
1 |
113968222 |
113951751 |
113968222 |
|
|
ENSRNOG00000025051 |
5 |
135441839 |
135447104 |
1 |
/ |
135421496 |
135441839 |
|
|
ENSPTRG00000000710 |
1 |
45596707 |
45610253 |
-1 |
45609676 |
45609676 |
45649675 |
|
* |
|
|
|
|
|
|
|