Table 3: A detailed description of the selected clusters in this study, i.e. the clusters that contain at least one sequence region of each orthologous intergenic sequence.
(a) Name of benchmark data set; (b)
cluster id; (c) region id within the cluster (used to
generate a profile); (d) Ensembl gene ID from which this
region is originating; (e) start and (f) stop
position of the region within the genome.
back
|
Gene (a) |
Cluster (b) |
region ID (c) |
Ensembl ID (d) |
start (e) |
Stop (f) |
|
cfos |
1 |
6 |
ENSG00000170345 |
73732735 |
73735571 |
|
|
1 |
7 |
ENSMUSG00000021250 |
81465628 |
81466260 |
|
|
1 |
8 |
ENSRNOG00000008015 |
109561965 |
109562607 |
|
|
1 |
9 |
ENSPTRG00000006553 |
74845113 |
74847954 |
|
|
2 |
10 |
ENSG00000170345 |
73733540 |
73733841 |
|
|
2 |
11 |
ENSMUSG00000021250 |
81463776 |
81465096 |
|
|
2 |
12 |
ENSRNOG00000008015 |
109560141 |
109561506 |
|
|
2 |
13 |
ENSPTRG00000006553 |
74845919 |
74846220 |
|
|
3 |
14 |
ENSG00000170345 |
73731651 |
73731862 |
|
|
3 |
15 |
ENSMUSG00000021250 |
81461044 |
81461513 |
|
|
3 |
16 |
ENSRNOG00000008015 |
109557418 |
109557867 |
|
|
3 |
17 |
ENSPTRG00000006553 |
74843941 |
74844152 |
|
|
|
|
|
|
|
|
hoxb2 |
1 |
1 |
ENSG00000173917 |
47100342 |
47097031 |
|
|
1 |
2 |
ENSMUSG00000047830 |
95930013 |
95932973 |
|
|
1 |
3 |
ENSMUSG00000047830 |
95933154 |
95934089 |
|
|
1 |
4 |
ENSRNOG00000008365 |
85093478 |
85096407 |
|
|
1 |
5 |
ENSRNOG00000008365 |
85096584 |
85097630 |
|
|
1 |
6 |
ENSPTRG00000009352 |
42929041 |
42925728 |
|
|
2 |
7 |
ENSG00000173917 |
47101885 |
47100420 |
|
|
2 |
8 |
ENSMUSG00000047830 |
95930947 |
95931576 |
|
|
2 |
9 |
ENSRNOG00000008365 |
85094470 |
85095030 |
|
|
2 |
10 |
ENSPTRG00000009352 |
42930606 |
42929122 |
|
|
3 |
11 |
ENSG00000173917 |
47097284 |
47097036 |
|
|
3 |
12 |
ENSMUSG00000047830 |
95934862 |
95935404 |
|
|
3 |
13 |
ENSRNOG00000008365 |
85098342 |
85098815 |
|
|
3 |
14 |
ENSPTRG00000009352 |
42925985 |
42925728 |
|
|
|
|
|
|
|
|
pax6 |
1 |
1 |
ENSG00000007372 |
31809130 |
31796972 |
|
|
1 |
2 |
ENSMUSG00000027168 |
105927848 |
105929364 |
|
|
1 |
3 |
ENSRNOG00000004410 |
91012633 |
91014137 |
|
|
1 |
4 |
ENSRNOG00000004410 |
91021300 |
91021525 |
|
|
1 |
5 |
ENSRNOG00000004410 |
91023302 |
91023739 |
|
|
1 |
6 |
ENSPTRG00000003474 |
32147753 |
32135710 |
|
|
2 |
7 |
ENSG00000007372 |
31816169 |
31809195 |
|
|
2 |
8 |
ENSMUSG00000027168 |
105924799 |
105925502 |
|
|
2 |
9 |
ENSMUSG00000027168 |
105925609 |
105926706 |
|
|
2 |
10 |
ENSRNOG00000004410 |
91009450 |
91010153 |
|
|
2 |
11 |
ENSRNOG00000004410 |
91010387 |
91011487 |
|
|
2 |
12 |
ENSPTRG00000003474 |
32154857 |
32147856 |
|
|
3 |
13 |
ENSG00000007372 |
31812756 |
31812169 |
|
|
3 |
14 |
ENSMUSG00000027168 |
105923278 |
105924708 |
|
|
3 |
15 |
ENSRNOG00000004410 |
91007988 |
91009422 |
|
|
3 |
16 |
ENSPTRG00000003474 |
32151423 |
32150866 |
|
|
|
|
|
|
|
|
scl |
1 |
1 |
ENSG00000162367 |
47068148 |
47065361 |
|
|
1 |
2 |
ENSMUSG00000028717 |
113964695 |
113967235 |
|
|
1 |
3 |
ENSRNOG00000025051 |
135435196 |
135437737 |
|
|
1 |
4 |
ENSPTRG00000000710 |
45613055 |
45610254 |