Module 9

Number of motifs
Number of conditions
Number of seed genes
Number of extended seed genes
Correlation extended seed
No. (putative) regulators in module
=
=
=
=
=
=
2
149
5
12
0.90006
0

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Additional motif analysis

Motif information

MotifMotif logoModule motif logo
ArcA:
negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA)
CRP:
cyclic AMP receptor protein




Gene information

GeneSeed/Extended SeedDescriptionDirect interaction (RegulonDB)Indirect interaction (RegulonDB)Motif instance
b0116 (lpd)Seed E3 monomerArcA

CRP

-

+-

ACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATA

AATTGTTAACAATTTTGTAAAAT

b1415 (aldA)Seed AldAArcA

CRP

-

+

TCCGTCTCTCTGATGATTGATGTTAATTAACAATGTATTCACCGAAAACAAACATATAAATC

TTTTATGAAGCCCTTCACAGAAT

b0118 (acnB)Seed b0118ArcA

CRP

-

+

TTGGGATTCGTTGAGAAAGGTGATTATCACCATGCGAATTAACGAAGTTTTTACGGAGGGAA

TTTTGTAAACAGATTAACACCTC

b0720 (gltA)Seed citrate synthase monomerArcA

CRP

-

+

ATTTAATTTTTAATCATCTAATTTGACAATCATTCAACAAAGTTGTTACAAACATTACCAGG

AACAGTGATCCAGGTCACGATAA

b3236 (mdh)Seed MdhArcA

CRP

-

+

TGCAAATTCTGCTTAAAAGTAAATTAATTGTTATCAAATTGATGTTGTTTTGGCTGAACGGT

TATGGTGGTTGATACAACATTAT

b0721 (sdhC)Extension succinate dehydrogenase membrane proteinArcA

CRP

+-

+

TGTTGAATGATTGTCAAATTAGATGATTAAAAATTAAATAAATGTTGTTATCGTGACCTGGA

TATCGTGACCTGGATCACTGTTC

b0729 (sucD)Extension succinyl-CoA synthetase, α subunit  

  

+-

+

  

  

b0723 (sdhA)Extension succinate dehydrogenase flavoprotein  

  

+-

+

  

  

b0726 (sucA)Extension subunit of E1(0) component of 2-oxoglutarate dehydrogenase  

  

+-

+

  

  

b0728 (sucC)Extension succinyl-CoA synthetase, β subunit  

  

+-

+

  

  

b0727 (sucB)Extension SucB  

  

+-

+

  

  

b0722 (sdhD)Extension succinate dehydrogenase membrane protein  

  

+-

+