Module 90

Number of motifs
Number of conditions
Number of seed genes
Number of extended seed genes
Correlation extended seed
No. (putative) regulators in module
=
=
=
=
=
=
1
79
6
14
0.8558
3

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Additional motif analysis

Motif information

MotifMotif logoModule motif logo
ArcA:
negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA)




Gene information

GeneSeed/Extended SeedDescriptionDirect interaction (RegulonDB)Indirect interaction (RegulonDB)Motif instance
b2537 (hcaR)Seed HcaR transcriptional dual regulatorArcA



TTGCTAATATGTGAAATAGTTAATTTCTACCAGCTGAGACGTTTTTTCGATAACAAGGGGAA

b1415 (aldA)Seed AldAArcA

-

TCCGTCTCTCTGATGATTGATGTTAATTAACAATGTATTCACCGAAAACAAACATATAAATC

b3603 (lldP)Seed LldP lactate transporterArcA

-

CTCACATCAATGTTGCCAATACATAACATTTAGTTAACCATTCATTGTCATTATCCCTACAC

b3846 (fadB)Seed dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenaseArcA

-

TCGGCATTTCTTTAATCTTTTGTTTGCATATTTTTAACACAAAATACACACTTCGACTCATC

b2092 (gatC)Seed GatC  

-

CTTTTATTTCTGGTATCGGTATCGAAGCATTACAAAATAAAATTCTGACTATCTTACAGGGG

b2844 (yqeF)Seed predicted acyltransferase  



TAAACAATTAAGATAACTGTAATTAACAATCATTTACTATTGCACTGTTAATTGGTGCGAGG

b2094 (gatA)Extension GatA  

-

  

b1853 (yebK)Extension predicted DNA-binding transcriptional regulator  



ACTGATCATGTTATGAAAAAAAATAACAACTTTTTTATCTGCTTTTGTCATTAACACGGCAC

b2096 (gatY)Extension GatY  

-

TCTCGATATTTAAAAACAAATAATTTCATTATATTTTGAAATCGAAAACAAACGACAGGATA

b2095 (gatZ)Extension   

-

  

b2093 (gatB)Extension GatB  

-

AAATCCCTCTGTAACAATAAAAAGGACTATTTATGAAACGCAAGATTATTGTCGCTTGCGGA

b0598 (cstA)Extension peptide transporter induced by carbon starvation  



TTGCTGTGTTGTTAAATTGTACAAAGATGTTATAGAAACAAAATGTAACATCTCTATGGACA

b2091 (gatD)Extension   

-

  

b3604 (lldR)Extension LldR transcriptional repressor  

-