Module 3

Number of motifs
Number of conditions
Number of seed genes
Number of extended seed genes
Correlation extended seed
No. (putative) regulators in module
=
=
=
=
=
=
1
49
8
32
0.86248
0

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Additional motif analysis

Motif information

MotifMotif logoModule motif logo
FlhDC:




Gene information

GeneSeed/Extended SeedDescriptionDirect interaction (RegulonDB)Indirect interaction (RegulonDB)Motif instance
b1073 (flgB)Seed flagellar basal-body rod protein FlgBFlhDC

+

TATTCCGCCGATAACGC

b1072 (flgA)Seed flagellar biosynthesis; assembly of basal-body periplasmic P ringFlhDC

+

TTATCGGCGGAATAAAC

b1924 (fliD)Seed flagellar cap protein FliD; filament capping protein; enables filament assemblyFlhDC

+

TTAGTCGCCGAAATACT

b1904 (yecR)Seed predicted proteinFlhDC

+

TTTCCGGCCATTGTCGC

b1944 (fliL)Seed flagellar biosynthesisFlhDC

+

TTTCCCCGCTTTGTTGC

b1938 (fliF)Seed flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar proteinFlhDC

+

CAAAGGCGCTAAATAGC

b1880 (flhB)Seed flagellar biosynthesis protein FlhBFlhDC

+

CAAAAGCCCTAAATCCC

b1922 (fliA)Seed RNA polymerase, sigma 28 (sigma F) factorFlhDC

+

TGTAACCCCCAAATAAC

b1945 (fliM)Extension flagellar motor switch protein FliM  

+

TTATTCTGCGATAACGA

b1948 (fliP)Extension flagellar biosynthesis protein FliP  

+

  

b1080 (flgI)Extension flagellar P-ring protein FlgI  

+

  

b1071 (flgM)Extension anti-sigma factor for FliA (sigma 28)  

+

  

b1940 (fliH)Extension flagellar biosynthesis protein FliH  

+

  

b1926 (fliT)Extension flagellar biosynthesis protein FliT  

+

TTAATGCGCAATATTGC

b1939 (fliG)Extension flagellar motor switch protein FliG  

+

  

b1947 (fliO)Extension flagellar biosynthesis protein FliO  

+

  

b1077 (flgF)Extension flagellar basal-body rod protein FlgF  

+

  

b1943 (fliK)Extension flagellar hook-length control protein FliK  

+

TTAGCGCCCTTGATTAC

b1925 (fliS)Extension flagellar biosynthesis protein FliS  

+

  

b1076 (flgE)Extension flagellar hook protein FlgE  

+

  

b1946 (fliN)Extension flagellar motor switch protein FliN  

+

  

b1079 (flgH)Extension flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein  

+

  

b1075 (flgD)Extension flagellar biosynthesis, initiation of hook assembly  

+

  

b1070 (flgN)Extension flagellar biosynthesis protein FlgN  

+

  

b1074 (flgC)Extension flagellar basal-body rod protein FlgC  

+

  

b1078 (flgG)Extension flagellar basal-body rod protein FlgG  

+

TGTAGGCCGGATAAGGC

b1921 (fliZ)Extension predicted regulator of FliA activity  

+

  

b1081 (flgJ)Extension FlgJ  

+

  

b1879 (flhA)Extension flagellar biosynthesis protein FlhA  

+

  

b1942 (fliJ)Extension flagellar biosynthesis protein FliJ  

+

  

b1949 (fliQ)Extension flagellar biosynthesis protein FliQ  

+

  

b1937 (fliE)Extension flagellar basal-body protein FliEFlhDC

+

CTATCCGCCAATAAACC