Module 35

Number of motifs
Number of conditions
Number of seed genes
Number of extended seed genes
Correlation extended seed
No. (putative) regulators in module
=
=
=
=
=
=
1
75
5
9
0.8859
1

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Additional motif analysis

Motif information

MotifMotif logoModule motif logo
Fis:
Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters




Gene information

GeneSeed/Extended SeedDescriptionDirect interaction (RegulonDB)Indirect interaction (RegulonDB)Motif instance
b3260 (dusB)Seed tRNA dihydrouridine synthase  

-

ATTTGCCGATTATTTACGCAAA

b3965 (trmA)Seed tRNA(m5U54)methyltransferaseFis

?

ATCTGGACATCTGATGAGCAAT

b1274 (topA)Seed DNA topoisomerase IFis

+

ATTTGCTTGACATTCGACCAAA

b0835 (yliG)Seed predicted SAM-dependent methylase  



GTATGGCTATTTTTTGAGCAAA

b0405 (queA)Seed b0405Fis

+

CATCGATTATATTCTATCCAAA

b3261 (fis)Extension Fis transcriptional dual regulator  

-

  

b1344 (ttcA)Extension predicted C32 tRNA thiolase  



GTTTGCCCCCAATTTGCCCCAT

b0469 (apt)Extension Apt  



AGGCGGTCAAAGGTTAAACAAC

b1876 (argS)Extension   



CGTTGCTGACGAAAACAGCCAT