Number of conditions
Number of seed genes
Number of extended seed genes
Correlation extended seed
No. (putative) regulators in module
=
=
=
=
=
76
4
5
0.90235
0
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![[View full size image]](./ExpressionProfiles/ExpressionProfile_seed_module_2.png){kind=link}
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| Number of motifs Number of conditions Number of seed genes Number of extended seed genes Correlation extended seed No. (putative) regulators in module | = = = = = = | 3 76 4 5 0.90235 0 | [View full size image] | [View full size image] |
| Motif | Motif logo | Module motif logo |
|---|---|---|
| NarL: pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes |  |  |
| NarP: nitrate/nitrite response regulator (sensor NarQ) |  |  |
| FNR: transcriptional regulation of aerobic, anaerobic respiration, osmotic balance |  |  |
| Gene | Seed/Extended Seed | Description | Direct interaction (RegulonDB) | Indirect interaction (RegulonDB) | Motif instance |
|---|---|---|---|---|---|
| b1474 (fdnG) | Seed | formate dehydrogenase N, α subunit | NarL NarP FNR | + - +- | ATACCCCT ATACCCCT ATTGAGGTAGGTCAA |
| b4070 (nrfA) | Seed | b4070 | NarL NarP FNR | +- + + | TTACACAT CTAACTCT ATTGATTAAAGACAA |
| b0873 (hcp) | Seed | hybrid-cluster protein | NarL NarP FNR | + + + | ATACCTCT ATACCTCT ATTGCGCTAAATCAA |
| b2208 (napF) | Seed | ferredoxin-type protein | NarL NarP FNR | - +- + | TTACCCCG TTACCCCG TTTGGTCGCTCTCAA |
| b2204 (napH) | Extension | ferredoxin-type protein | | - +- + | |
![[View full size image]](./ExpressionProfiles/ExpressionProfile_extend_module_2.png){kind=link}