Number of conditions
Number of seed genes
Number of extended seed genes
Correlation extended seed
No. (putative) regulators in module
=
=
=
=
=
48
4
4
0.96325
1
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![[View full size image]](./ExpressionProfiles/ExpressionProfile_seed_module_25.png){kind=link}
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| Number of motifs Number of conditions Number of seed genes Number of extended seed genes Correlation extended seed No. (putative) regulators in module | = = = = = = | 3 48 4 4 0.96325 1 | [View full size image] | [View full size image] |
| Motif | Motif logo | Module motif logo |
|---|---|---|
| IHF: |  |  |
| FNR: transcriptional regulation of aerobic, anaerobic respiration, osmotic balance |  |  |
| CRP: cyclic AMP receptor protein |  |  |
| Gene | Seed/Extended Seed | Description | Direct interaction (RegulonDB) | Indirect interaction (RegulonDB) | Motif instance |
|---|---|---|---|---|---|
| b2240 (glpT) | Seed | GlpT glycerol-3-P MFS transporter | IHF FNR CRP | - + + | AATCAGGCTGTTAA TTTGATTTCGCGCAT ATGTGTGCGGCAATTCACATTTA |
| b3365 (nirB) | Seed | nitrite reductase, large subunit | IHF FNR CRP | - + - | AATCAGCAATATAC TTTGATTTACATCAA GAATTTGATTTACATCAATAAGC |
| b3118 (tdcA) | Seed | TdcA transcriptional activator | IHF FNR CRP | + + + | TATCCGGTAATTGC TTTGACAAAAATCAG ATTTGTGAGTGGTCGCACATATC |
| b0904 (focA) | Seed | FocA formate FNT transporter | IHF FNR CRP | + + + | AATCAAATATTTAC TATGATCTATATCAA AGATATGATCTATATCAATTTCT |
![[View full size image]](./ExpressionProfiles/ExpressionProfile_extend_module_25.png){kind=link}