Number of conditions
Number of seed genes
Number of extended seed genes
Correlation extended seed
No. (putative) regulators in module
=
=
=
=
=
81
5
7
0.91488
0
[View full size image]
![[View full size image]](./ExpressionProfiles/ExpressionProfile_seed_module_1.png){kind=link}
[View full size image]
| Number of motifs Number of conditions Number of seed genes Number of extended seed genes Correlation extended seed No. (putative) regulators in module | = = = = = = | 3 81 5 7 0.91488 0 | [View full size image] | [View full size image] |
| Motif | Motif logo | Module motif logo |
|---|---|---|
| NarL: pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes |  |  |
| IHF: |  |  |
| FNR: transcriptional regulation of aerobic, anaerobic respiration, osmotic balance |  |  |
| Gene | Seed/Extended Seed | Description | Direct interaction (RegulonDB) | Indirect interaction (RegulonDB) | Motif instance |
|---|---|---|---|---|---|
| b1223 (narK) | Seed | NarK nitrite MFS transporter | NarL IHF FNR | + + + | ATACCCAT TTACATCAAATTGC TTTGATTTACATCAA |
| b3365 (nirB) | Seed | nitrite reductase, large subunit | NarL IHF FNR | + - + | ATACCCAT AATCAGCAATATAC TTTGATTTACATCAA |
| b1224 (narG) | Seed | nitrate reductase A, α subunit | NarL IHF FNR | + + + | TTACCCAT TTTCAGAGCGTTAC CTTGATCGTTATCAA |
| b4070 (nrfA) | Seed | b4070 | NarL IHF FNR | +- - + | TTACACAT TTACAATTGATTAA ATTGATTAAAGACAA |
| b0904 (focA) | Seed | FocA formate FNT transporter | NarL IHF FNR | - + + | TTACTCCG AATCAAATATTTAC TATGATCTATATCAA |
| b1225 (narH) | Extension | nitrate reductase A, β subunit | | + + + | |
| b1226 (narJ) | Extension | molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 | | + + + | |
![[View full size image]](./ExpressionProfiles/ExpressionProfile_extend_module_1.png){kind=link}