Number of conditions
Number of seed genes
Number of extended seed genes
Correlation extended seed
No. (putative) regulators in module
=
=
=
=
=
45
4
4
0.96342
0
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![[View full size image]](./ExpressionProfiles/ExpressionProfile_seed_module_18.png){kind=link}
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| Number of motifs Number of conditions Number of seed genes Number of extended seed genes Correlation extended seed No. (putative) regulators in module | = = = = = = | 2 45 4 4 0.96342 0 | [View full size image] | [View full size image] |
| Motif | Motif logo | Module motif logo |
|---|---|---|
| ArcA: negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) |  |  |
| CRP: cyclic AMP receptor protein |  |  |
| Gene | Seed/Extended Seed | Description | Direct interaction (RegulonDB) | Indirect interaction (RegulonDB) | Motif instance |
|---|---|---|---|---|---|
| b3907 (rhaT) | Seed | rhamnose RhaT transporter | ArcA CRP | - + | ATGCCGCGTAAGCAGTTGGTTCATTATAGTTAATTAAATGATATTGAAAATGATTATCAATG AGATGTGAAGCAAATCACCCACT |
| b1388 (paaA) | Seed | putative subunit of phenylacetate-CoA oxygenase | CRP | + | CATACAAAATTTGTGATTTTACTTAACTATTGTGTAACTTTCATAAAACAATGTGATTCGTG ATTTGTGATTTTACTTAACTATT |
| b2844 (yqeF) | Seed | predicted acyltransferase | | TAAACAATTAAGATAACTGTAATTAACAATCATTTACTATTGCACTGTTAATTGGTGCGAGG CTTTGTGATAAAAATCACTTTTT | |
| b4240 (treB) | Seed | TreB | ArcA CRP | + +- | TCATCTGCCATGGGGCTTTATGATGAGCAAAATAAACCAAACGGATATCGATCGGTTGATTG AATTGTGATCTTCGCTGCGTTTC |
![[View full size image]](./ExpressionProfiles/ExpressionProfile_extend_module_18.png){kind=link}