| Seed Number |
Combined number |
Function module |
Regulators |
Confirmed Regulators |
Confirmed Motifs |
Motif logo |
Genes |
Enriched Function |
|---|
| Module_10 |
1 |
Ribosome biogenesis |
FHL1_YPD
GAT3_YPD
RAP1_YPD
DAL81_SM
FHL1_SM
RAP1_SM
FHL1_RAPA
FHL1_H2O2Hi
|
FHL1_YPD
RAP1_YPD
FHL1_SM
FHL1_RAPA
|
- |
- |
YDL136W YBR191W YDL130W YDL083C YGR148C YDR418W YDR450W YGL189C YER056C-A YER131W YGL031C YGL103W YER102W YDL061C YBL072C YCR031C YBR118W YBR189W YLR167W YJR079W YLR029C YLR061W YML045W YJR160C YLR333C YOL127W YOL040C YOR293W YOR182C YOR167C YPL220W YOR096W YLR344W YLR441C YJL190C |
PROTEIN SYNTHESIS(7.22e-13)
ribosome biogenesis(5.78e-12)
translation(0.323)
C-compound and carbohydrate transport(0.423)
cytoplasmic and nuclear protein degradation(0.447)
|
| Module_12 |
1 |
Ribosome biogenesis |
FHL1_YPD
GAT3_YPD
RAP1_YPD
FHL1_SM
RAP1_SM
SFP1_SM
FHL1_RAPA
FHL1_H2O2Hi
|
FHL1_YPD
FHL1_SM
FHL1_RAPA
|
- |
- |
YBR143C YCL017C YDL208W YDR064W YDR399W YDR471W YDR487C YBR034C YCR034W YDL082W YBL087C YDL131W YDR171W YDR233C YDR321W YDR385W YDR417C YER074W YDR234W YGL123W YGL147C YDR418W YGR085C YEL026W YER009W YGL077C YGR118W YGR214W YHR128W YGL102C YGR111W YHL015W YHR004C YHR020W YHR089C YHR097C YGL135W YGR048W YGR160W YGR264C YHR021C YIL018W YER043C YER156C YHL033C YEL046C YGR034W YHR007C YBL024W YER103W YGR027C YDL061C YHR203C YIL053W YIL069C YIL133C YDL014W YBR249C YDL182W YAL036C YBL092W YJL191W YJR070C YLR339C YLR355C YJL136C YLR175W YLR197W YLR388W YML022W YJL177W YJR016C YKR059W YLR062C YLR198C YLR293C YLR325C YMR217W YNL255C YOL039W YPL230W YPL238C YPR043W YMR202W YMR242C YNL096C YOL040C YPL079W YNL209W YMR260C YNL114C YNL178W YJL138C YOR108W YPL081W YPR102C YPR110C YPR118W YOL139C YOR133W YPL226W YMR321C YNL244C YOR309C YPL131W YPR080W YNL069C YNL301C YOL077C YOR063W YOR167C YLL019C YPL220W YPL037C YPL237W YPR058W YPR074C YLR216C YLR264W YMR105C YKL056C YKL191W YLL044W YLR185W YLR249W YKL006W YLR344W YLR432W YLR448W YML018C YML063W YML123C YKL081W YLL045C YLR178C YKL181W YMR015C YMR145C YLR075W YLR179C YLL026W |
PROTEIN SYNTHESIS(6.01e-12)
ribosome biogenesis(1.46e-11)
translation(2.22e-09)
amino acid metabolism(0.00174)
detoxification involving cytochrome P450(0.00309)
|
| Module_15 |
1 |
Ribosome biogenesis |
FHL1_YPD
RAP1_YPD
FHL1_SM
RAP1_SM
FHL1_RAPA
|
FHL1_YPD
RAP1_YPD
FHL1_SM
FHL1_RAPA
|
- |
- |
YDR382W YDL081C YDL136W YBR191W YDL130W YDL083C YDR418W YDR450W YER056C-A YER131W YGL031C YGL103W YER102W YDL061C YDR012W YBL072C YBR031W YCR031C YBR118W YBR189W YMR116C YLR167W YJR079W YLR029C YLR061W YLR340W YLR054C YLR406C YLR333C YOL127W YOL040C YOR293W YPL090C YOR167C YPL220W YLR048W YOR096W YLR344W YLR441C YJL190C |
PROTEIN SYNTHESIS(-1.14e-13)
ribosome biogenesis(1.63e-12)
translation(0.00943)
fermentation(0.215)
assembly of protein complexes(0.48)
|
| Module_19 |
1 |
Ribosome biogenesis |
FHL1_YPD
FHL1_SM
FHL1_RAPA
|
FHL1_YPD
FHL1_SM
FHL1_RAPA
|
- |
- |
YDL208W YDL082W YDL131W YDR417C YGL123W YGL147C YGR020C YGL076C YGL148W YGR085C YGR285C YGR118W YGL102C YHL015W YGR034W YGR027C YHR203C YIL133C YDL213C YBR249C YDR429C YBL092W YJR014W YML008C YLR175W YLR197W YJL177W YLR062C YLR150W YLR198C YLR293C YLR325C YNL255C YPL238C YPR043W YNL096C YOR178C YPL079W YNL178W YOR276W YPL081W YPL273W YPR062W YPR102C YNL067W YOL139C YNL244C YPL131W YPR080W YOR063W YPL028W YPL037C YPL237W YLL044W YML063W YLR449W YLR075W |
PROTEIN SYNTHESIS(7.71e-12)
ribosome biogenesis(9.86e-12)
translation(3.19e-05)
osmotic and salt stress response(0.0463)
rRNA processing(0.0886)
|
| Module_2 |
1 |
Ribosome biogenesis |
FHL1_YPD
RAP1_YPD
FHL1_SM
FHL1_RAPA
|
FHL1_YPD
RAP1_YPD
FHL1_SM
FHL1_RAPA
|
- |
- |
YDR064W YDR447C YDL075W YGL147C YHR203C YBR084C-A YBR181C YDL191W YKR057W YLR062C YOR312C YPL198W YOL120C YOR234C YPL143W YOL121C YNL162W YJL179W YKL047W YNL302C YLR287C-A YLR367W YKR094C YJR145C YLR185W YJL189W YLR322W |
PROTEIN SYNTHESIS(1.33e-12)
ribosome biogenesis(5.54e-12)
protein folding and stabilization(0.241)
cytoplasmic and nuclear protein degradation(0.369)
protein degradation(0.525)
|
| Module_20 |
1 |
Ribosome biogenesis |
FHL1_YPD
GAT3_YPD
RAP1_YPD
YAP5_YPD
FHL1_SM
RAP1_SM
FHL1_RAPA
FHL1_H2O2Hi
|
FHL1_YPD
RAP1_YPD
YAP5_YPD
FHL1_SM
FHL1_RAPA
|
- |
- |
YDL136W YBR191W YDL130W YGR148C YDR418W YDR450W YGL189C YER056C-A YER131W YGL031C YGL103W YER102W YBL072C YCR031C YBR189W YLR167W YJR079W YLR029C YLR061W YML045W YJR160C YLR333C YOL127W YOL040C YOR293W YOR182C YOR167C YPL220W YLR344W YKL152C YLR441C |
PROTEIN SYNTHESIS(3.55e-12)
ribosome biogenesis(6.67e-12)
glycolysis and gluconeogenesis(0.176)
C-compound and carbohydrate transport(0.387)
cytoplasmic and nuclear protein degradation(0.409)
|
| Module_4 |
1 |
Ribosome biogenesis |
FHL1_YPD
GAT3_YPD
RAP1_YPD
FHL1_SM
RAP1_SM
FHL1_RAPA
FHL1_H2O2Hi
|
FHL1_YPD
RAP1_YPD
FHL1_SM
FHL1_RAPA
|
- |
- |
YDL136W YBR191W YDL130W YDL083C YGR148C YDR418W YDR450W YGL189C YER056C-A YER131W YGL031C YGL103W YER102W YDL061C YBL072C YCR031C YBR118W YBR189W YLR167W YJR079W YLR029C YLR061W YML045W YJR160C YLR333C YOL127W YOL040C YOR293W YOR182C YOR167C YPL220W YOR096W YLR344W YKL152C YLR441C YJL190C |
PROTEIN SYNTHESIS(1.18e-11)
ribosome biogenesis(1.78e-11)
glycolysis and gluconeogenesis(0.201)
translation(0.33)
C-compound and carbohydrate transport(0.432)
|
| Module_5 |
1 |
Ribosome biogenesis |
FHL1_YPD
PDR1_YPD
FHL1_SM
FHL1_RAPA
FHL1_H2O2Hi
|
FHL1_YPD
FHL1_SM
FHL1_RAPA
|
- |
- |
YDL082W YDL131W YDR417C YER074W YGL123W YGL147C YGR020C YGL076C YGL148W YGR085C YGR285C YGR118W YGL102C YGR103W YHL015W YBR162W-A YER148W YHL033C YGL105W YGR034W YCR016W YGR027C YHR203C YIL133C YDR429C YML008C YLR175W YLR197W YJL177W YLR062C YLR150W YLR198C YLR293C YLR325C YNL255C YPL238C YPR043W YOR210W YPL079W YNL178W YPL081W YPR102C YPR110C YNL067W YOL139C YPR080W YOL077C YPL037C YPL237W YJL148W YJL188C YLL044W YLR448W YML063W YKL009W YKL160W YLL045C YLR449W YLR075W |
PROTEIN SYNTHESIS(-2.57e-12)
ribosome biogenesis(-3.41e-13)
tRNA synthesis(0.00328)
translation(0.00377)
rRNA synthesis(0.00596)
|
| Module_3 |
2 |
Galactose metabolism |
GAL4_YPD
GAL80_YPD
NRG1_H2O2Hi
GAL4_GAL
GAL4_RAFF
|
GAL4_YPD
GAL4_GAL
GAL4_RAFF
|
- |
- |
YBR018C YDR009W YBR019C YBR020W YBR022W YLR081W |
C-compound and carbohydrate metabolism(0.000461)
C-compound and carbohydrate utilization(0.00234)
METABOLISM(0.0239)
transcriptional control(0.0539)
mRNA synthesis(0.0825)
|
| Module_13 |
3 |
Cell cycle |
MBP1_YPD
MBP1_H2O2Hi
MBP1_H2O2Lo
|
MBP1_YPD
MBP1_H2O2Hi
MBP1_H2O2Lo
|
M_11
M_12
M_18
M_67 |
 |
YBR073W YBR088C YCR065W YDL105W YDR503C YDL163W YDL018C YDR097C YDL003W YFL060C YGR188C YHR110W YGL116W YGR109C YGR221C YJL018W YGR238C YAR003W YJL019W YAR007C YER170W YGR143W YGR151C YER070W YGR152C YIL026C YIL066C YIL106W YGL200C YGR041W YGR153W YHR123W YHR153C YCL061C YFR027W YIL132C YIL140W YER095W YFL008W YIL141W YDL156W YDL164C YDR507C YAR008W YBR070C YDL102W YDL197C YBL035C YBR071W YDL103C YBR277C YCL024W YJR030C YLR212C YLR236C YLR103C YMR001C YMR032W YMR078C YJL072C YLR183C YKL045W YKL108W YJL074C YML060W YML061C YOL007C YOR033C YNL072W YNL312W YOR074C YOR114W YNL233W YNL273W YNL289W YOL017W YPL208W YPL256C YJL115W YNL082W YOL090W YPL153C YPL209C YPL241C YJR154W YNL300W YPL163C YPL267W YPR120C YMR199W YKR013W YNL165W YNL309W YKR077W YPL124W YNL262W YNL310C YOL069W YOR144C YPR018W YLR383W YMR179W YLR233C YLR376C YJL181W YKL089W YLR234W YKL165C YLR457C YML027W YKR012C YKL042W YKL113C YLL022C YLL002W YLR386W YML102W |
DNA processing(-8.23e-12)
DNA synthesis and replication(-6.22e-12)
CELL CYCLE AND DNA PROCESSING(-1.79e-12)
cell cycle(1.85e-11)
mitotic cell cycle and cell cycle control(1.81e-09)
|
| Module_14 |
3 |
Cell cycle |
FKH1_YPD
FKH2_YPD
HIR1_YPD
HIR2_YPD
HIR3_YPD
TBS1_YPD
GLN3_SM
HAP5_SM
PHO2_SM
FKH2_H2O2Hi
ROX1_H2O2Hi
PHO2_Pi
|
HIR2_YPD
HIR3_YPD
|
- |
- |
YDR224C YDR225W YBL003C YBL002W YBR009C YBR010W YNL030W YNL031C |
transcriptional control(7.46e-10)
mRNA synthesis(4.94e-09)
RNA synthesis(2.82e-08)
TRANSCRIPTION(2.02e-06)
(NA)
|
| Module_16 |
3 |
Cell cycle |
NDD1_YPD
REB1_YPD
FKH2_H2O2Hi
RCS1_H2O2Lo
MCM1_Alpha
|
NDD1_YPD
FKH2_H2O2Hi
MCM1_Alpha
|
M_8 |
 |
YDR146C YGR108W YIL158W YGL116W YJL051W YGL021W YIL106W YCL012W YMR001C YMR032W YML119W YLR190W YOL070C YOR025W YOR315W YNL058C YPR119W YPL155C YPL141C YJR092W YML064C YLR131C |
cell cycle(9.11e-05)
mitotic cell cycle and cell cycle control(0.000222)
CELL CYCLE AND DNA PROCESSING(0.00331)
cytokinesis (cell division)
/septum formation(0.00699)
transcriptional control(0.0361)
|
| Module_17 |
3 |
Cell cycle |
MCM1_YPD
SMP1_YPD
SWI5_YPD
MCM1_Alpha
ASH1_BUT14
SOK2_BUT14
|
SWI5_YPD
ASH1_BUT14
|
M_8 |
|
YIL009W YDL117W YBR158W YDR055W YJL159W YLR079W YKL163W YKL164C YNL327W YNL078W YLR274W YKL185W |
cell cycle(0.00399)
mitotic cell cycle and cell cycle control(0.00516)
stress response(0.00702)
CELL RESCUE, DEFENSE AND VIRULENCE(0.0243)
CELL CYCLE AND DNA PROCESSING(0.0299)
|
| Module_18 |
3 |
Cell cycle |
MBP1_YPD
MBP1_H2O2Hi
MBP1_H2O2Lo
|
MBP1_YPD
MBP1_H2O2Hi
MBP1_H2O2Lo
|
M_11
M_12
M_18
M_67 |
|
YBR088C YCR065W YDR279W YDR503C YDL163W YDL018C YDR097C YDR400W YDL003W YFL060C YHR110W YGR109C YGR189C YGR221C YJL018W YGR238C YAR003W YJL019W YAR007C YER170W YGR151C YER070W YGL175C YGR152C YIL026C YIL066C YIL106W YHR153C YCL061C YFR027W YIL132C YIL140W YER095W YER111C YFL008W YDL101C YIL141W YDL156W YDL164C YAR008W YBR070C YDL102W YDL197C YBL035C YCL024W YJR030C YLR212C YLR236C YLR103C YJL072C YLR183C YJL073W YKL045W YKL108W YJL074C YML060W YNL263C YML061C YOL007C YOR033C YNL072W YNL312W YOR074C YOR114W YOR321W YNL233W YNL273W YNL289W YOL017W YPL208W YPL256C YJL115W YNL082W YOL090W YPL153C YPL241C YJR154W YNL300W YPL163C YPL267W YPR120C YMR199W YKR013W YNL309W YKR077W YPL124W YNL102W YNL262W YNL310C YOR144C YPR018W YLR383W YMR179W YLR233C YLR464W YJL181W YKL089W YLR234W YKL165C YLR457C YML027W YKR012C YKL042W YKL113C YLL022C YLL002W YML102W |
DNA processing(-3.42e-12)
DNA synthesis and replication(-3.24e-12)
CELL CYCLE AND DNA PROCESSING(1.04e-12)
DNA recombination and DNA repair(5.37e-10)
cell cycle(3.94e-08)
|
| Module_6 |
3 |
Cell cycle |
MBP1_YPD
SWI4_YPD
SWI6_YPD
MBP1_H2O2Hi
MBP1_H2O2Lo
ASH1_BUT14
|
MBP1_YPD
SWI4_YPD
SWI6_YPD
MBP1_H2O2Hi
MBP1_H2O2Lo
ASH1_BUT14
|
M_11
M_12
M_18
M_67 |
|
YBR073W YBR088C YCR065W YDL105W YDR503C YDL018C YDR097C YBR161W YDL003W YFL060C YHR110W YGR109C YGR221C YJL018W YGR238C YAR003W YJL019W YAR007C YER170W YGR015C YGR143W YGR151C YER070W YFL064C YGR152C YIL026C YIL066C YIL106W YEL076C YFR026C YGR041W YGR153W YHR123W YHR153C YER189W YCL061C YFR027W YIL132C YIL140W YER095W YFL008W YDL101C YIL141W YDL164C YDR507C YBL111C YAR008W YBR070C YDL102W YDL197C YBL035C YBR071W YBR233W YDL103C YCL024W YJR030C YLR212C YLR236C YLR103C YMR078C YJL072C YLR183C YKR090W YMR094W YKL045W YKL108W YJL074C YML060W YML061C YOL007C YOR033C YNL072W YNL312W YOR074C YNL225C YNL233W YNL273W YOL017W YPL208W YPL256C YJL115W YNL082W YOL090W YPL153C YPL209C YPL241C YNL300W YPL163C YPL267W YPR120C YMR199W YKR013W YNL181W YKR077W YLL067C YNL262W YOR144C YPR018W YLR383W YMR179W YLR049C YLR233C YLR464W YJL181W YKL089W YKL165C YML027W YKL042W YKL113C YLL022C YLL002W YLR386W YML102W |
DNA synthesis and replication(8.62e-12)
DNA processing(1.03e-11)
CELL CYCLE AND DNA PROCESSING(1.66e-11)
DNA recombination and DNA repair(1.43e-09)
cell cycle(3.79e-08)
|
| Module_7 |
3 |
Cell cycle |
MBP1_YPD
STB1_YPD
SWI4_YPD
SWI6_YPD
MBP1_H2O2Hi
MBP1_H2O2Lo
|
MBP1_YPD
STB1_YPD
SWI4_YPD
SWI6_YPD
MBP1_H2O2Hi
MBP1_H2O2Lo
|
M_11
M_12
M_18
M_67 |
|
YBR073W YBR088C YCR065W YDL105W YDR279W YDR503C YDL163W YDL010W YDL018C YDL227C YDR097C YDR400W YBR161W YDL003W YDR481C YEL077C YFL060C YGL075C YGL163C YHR110W YHR188C YER001W YGR109C YGR189C YGR221C YHR127W YHR149C YJL018W YFR046C YGR238C YAR003W YIL056W YJL019W YAR007C YER170W YGR015C YGR143W YGR151C YHR159W YIL177C YBL112C YEL075C YER070W YFL064C YGL207W YGR152C YGR296W YIL026C YIL066C YIL106W YEL076C YFL065C YGR041W YGR153W YHL049C YHR153C YER189W YCL061C YFL066C YFR027W YHL050C YIL132C YIL140W YER095W YER111C YER190W YFL008W YFL067W YDL101C YIL141W YDL156W YDL164C YDR307W YDR507C YBL111C YAR008W YBL113C YBR070C YDL102W YDL197C YDL221W YBL035C YBR071W YBR236C YBR233W YDL103C YDR309C YBR277C YCL024W YLL066C YJR030C YLR188W YLR212C YLR236C YLR103C YLR467W YMR001C YMR048W YMR078C YJL072C YJL225C YLR183C YKR090W YLL032C YMR094W YJL073W YKL045W YKL108W YJL074C YLR382C YML060W YLR462W YMR177W YML061C YOL007C YOR033C YNL072W YNL304W YNL312W YOR074C YOR114W YOR321W YPL255W YNL225C YNL233W YNL273W YOL017W YOR195W YPL208W YPL256C YJL115W YNL082W YNL290W YOL034W YOL090W YPL057C YPL153C YPL209C YPL241C YNL339C YOL011W YOL019W YNL300W YPL163C YPL267W YPL283C YPR120C YMR199W YKR013W YNL181W YNL309W YKR077W YPL124W YLL067C YNL102W YNL262W YNL310C YNL334C YOR144C YPL221W YPR018W YLR383W YLR463C YMR179W YLR049C YLR121C YLR233C YLR376C YLR464W YJL181W YKL101W YKL089W YLR234W YKL165C YLR457C YLR465C YML027W YKR012C YKL042W YKL113C YLL022C YLL002W YLR386W YLR466W YML102W YML133C |
DNA processing(1.11e-12)
DNA synthesis and replication(1.51e-12)
CELL CYCLE AND DNA PROCESSING(8.87e-12)
DNA recombination and DNA repair(2.25e-09)
mitotic cell cycle and cell cycle control(6.8e-08)
|
| Module_8 |
3 |
Cell cycle |
SWI4_YPD
MBP1_H2O2Hi
STE12_Alpha
TEC1_Alpha
|
SWI4_YPD
MBP1_H2O2Hi
|
M_11
M_12
M_18
M_67 |
|
YDR518W YAL023C YBR073W YBR088C YCL065W YCR041W YCR065W YDR279W YDR503C YDL211C YDL018C YDR033W YDR097C YDR113C YDR224C YDR400W YDL003W YDR297W YDR481C YDR489W YEL040W YEL077C YGL027C YHR110W YHR188C YER001W YER016W YGR109C YGR189C YGR221C YHR127W YHR149C YIL063C YIL119C YJL018W YGL253W YGR014W YAR003W YJL019W YAR007C YGL022W YGR143W YGR151C YIL177C YIR008C YBR007C YER070W YER086W YGL207W YGR152C YGR296W YHR138C YIL066C YGL200C YGR041W YHL049C YER118C YGR146C YHL026C YHL050C YIL140W YEL047C YER095W YER190W YFL067W YGL162W YDL101C YIL141W YDL164C YBR054W YBR070C YBR092C YDL157C YDR053W YDR348C YBL035C YBR071W YCR024C-A YDL055C YDL095W YDL103C YDR261C YDR309C YAL053W YCL024W YJL079C YLL066C YLR188W YLR212C YLR103C YLR467W YJL072C YJL080C YLR183C YJR143C YKR090W YLR300W YLR372W YLR380W YML119W YJL073W YLR326W YJL217W YLR342W YJR144W YKL045W YJL074C YLR190W YML060W YLR462W YNL030W YNL231C YNL263C YNL287W YML061C YOL007C YOR033C YOR081C YOR137C YMR296C YNL160W YNL312W YOR074C YOR114W YOR321W YNL169C YNL233W YNL273W YNL313C YOL017W YOR195W YPL208W YPL232W YPL256C YJL115W YMR305C YOL034W YOL090W YPL057C YPL153C YNL283C YNL339C YOL011W YOL019W YOL123W YOR229W YMR238W YNL300W YOR038C YPL163C YPL267W YPR120C YMR199W YKR013W YKR021W YNL309W YKR077W YOR039W YOR247W YOR326W YPL036W YPL124W YPR017C YMR200W YLL067C YNL262W YOR176W YOR248W YPL221W YLR383W YMR179W YJR043C YKL008C YLL012W YLR049C YLR121C YLR233C YLR464W YML116W YJL173C YJL181W YKL101W YKL089W YLR154C YLR194C YLR234W YKL165C YLR297W YML012W YML027W YML109W YMR031C YJL078C YKR012C YJR006W YKL113C YLL022C YLL002W YLR466W YML102W |
DNA synthesis and replication(1.78e-12)
DNA processing(6.35e-12)
DNA recombination and DNA repair(9.75e-09)
CELL CYCLE AND DNA PROCESSING(1.87e-07)
DNA repair(5.96e-06)
|
| Module_9 |
3 |
Cell cycle |
NDD1_YPD
FKH2_H2O2Hi
MCM1_Alpha
|
NDD1_YPD
FKH2_H2O2Hi
MCM1_Alpha
|
M_8
M_30 |
 |
YDR146C YGR108W YIL158W YGL116W YJL051W YGL021W YIL106W YCL012W YMR001C YMR032W YML119W YLR190W YOR025W YOR315W YNL058C YPR119W YPL155C YPL141C YJR092W YLR353W YML064C YLR131C |
cell cycle(9.11e-05)
mitotic cell cycle and cell cycle control(0.000222)
CELL CYCLE AND DNA PROCESSING(0.00331)
cytokinesis (cell division)
/septum formation(0.00699)
budding, cell polarity and filament formation(0.0104)
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