Last update : May 15, 2020
Motif Matrix Databases - Source Release Number and Citation 
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(listed in release order)

Jaspar_2020 : collections for Arabidopsis thaliana, other plants, Homo sapiens, Mus musculus.  
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Source Release Number : version 2020 8th release, Jaspar CORE Vertebrata Non-Redundant Individual PWMs MEME
Citation : Fornes O, Castro-Mondragon JA, Khan A, et al. JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 2019; doi: 10.1093/nar/gkz1001
Source URL : http://jaspar.genereg.net/docs/

Description of new PWM databases : Jaspar_year_species_collection (number of profiles):
-Jaspar_2020_Arabidopsis_thaliana_core (507)
-Jaspar_2020_Arabidopsisthaliana_unvalidated (43)
-Jaspar_2020_other_plants_core (64)
-Jaspar_2020_other_plants_unvalidated (62)
-Jaspar_2020_Homo_sapiens_core (810)
-Jaspar_2020_Homo_sapiens_cne (233)
-Jaspar_2020_Homo_sapiens_core-phylofacts (174) [core-redundant]
-Jaspar_2020_Homo_sapiens_unvalidated (158)
-Jaspar_2020_Mus_musculus_core (196)
-Jaspar_2020_Mus_musculus_pbm (208)
-Jaspar_2020_Mus_musculus_pbm_homeo (176)
-Jaspar_2020_Mus_musculus_unvalidated (12)

Jaspar_2020_plants : 
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Source Release Number : version 2020 8th release, Jaspar CORE Plants Non-Redundant Individual PWMs MEME
Citation : Fornes O, Castro-Mondragon JA, Khan A, et al. JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 2019; doi: 10.1093/nar/gkz1001
Note : http://jaspar.genereg.net/downloads/

Jaspar_2008 : 
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Source Release Number : version 2009, Jaspar CORE Vertebrata
Citation : Bryne JC, Valen E, Tang MH, Marstrand T, Winther O, da Piedade I, Krogh A, Lenhard B, Sandelin A. JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. Nucleic Acids Res. 2008 Jan;36(Database issue):D102-6. 
Note : http://jaspar.genereg.net/

RegulonDB_2008 :
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Source Release Number : EcoliK12-RegulonDB-6.4
Citation : Gama-Castro, S. et al. (2008) RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation, Nucleic Acids Research, Vol. 36, Database issue:D120-4
Note : check for new releases on http://regulondb.ccg.unam.mx/data/Matrix_AlignmentSet.txt. 

Transfac_2006 :
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Source Release Number : professional release 10.2, June 2006
Citation : Matys V, Kel-Margoulis OV, Fricke E, Liebich I, Land S, Barre-Dirrie A, et al.: TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res 2006, 34:D108-D110.
Note : http://www.gene-regulation.com/pub/databases.html

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